Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30667.Seq
(748 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g05850.1 68414.m00612 chitinase-like protein 1 (CTL1) similar... 30 1.4
At5g52850.1 68418.m06560 pentatricopeptide (PPR) repeat-containi... 29 3.3
At5g61160.1 68418.m07673 transferase family protein similar to a... 28 7.6
At4g26120.1 68417.m03760 ankyrin repeat family protein / BTB/POZ... 27 10.0
At2g44590.3 68415.m05551 dynamin-like protein D (DL1D) identical... 27 10.0
At2g44590.2 68415.m05550 dynamin-like protein D (DL1D) identical... 27 10.0
At2g44590.1 68415.m05549 dynamin-like protein D (DL1D) identical... 27 10.0
At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)... 27 10.0
>At1g05850.1 68414.m00612 chitinase-like protein 1 (CTL1) similar to
class I chitinase GI:7798656 from [Halimolobos perplexa
var. perplexa]; contains Pfam profile PF00182: Chitinase
class I; identical to cDNA chitinase-like protein 1
(CTL1) CTL1-ELP1 allele GI:17226328
Length = 321
Score = 30.3 bits (65), Expect = 1.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1
Query: 145 GNDVSFQGWDAFWWTSVAC 89
GN V QGW+ WW+ C
Sbjct: 38 GNKVCTQGWECSWWSKYCC 56
>At5g52850.1 68418.m06560 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 893
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 589 GNSTISASAAARRMFRDWNSTREMSRRPPTT 497
GNS + A A++R++ WN R M RR T
Sbjct: 465 GNSLVDAYASSRKVDYAWNVIRSMKRRDNIT 495
>At5g61160.1 68418.m07673 transferase family protein similar to
anthocyanin 5-aromatic acyltransferase from Gentiana
triflora GI:4185599, malonyl CoA:anthocyanin
5-O-glucoside-6'''-O-malonyltransferase from Perilla
frutescens GI:17980232, Salvia splendens GI:17980234;
contains Pfam profile PF02458 transferase family
Length = 452
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +3
Query: 291 SKNSSTRDLPLAGFHGEVLPGGQRSLFILFTHF 389
+++SS+RD+ F+ +LP +RSL ++ THF
Sbjct: 47 TESSSSRDV----FYSSILPKLERSLSLILTHF 75
>At4g26120.1 68417.m03760 ankyrin repeat family protein / BTB/POZ
domain-containing protein contains Pfam domain, PF00023:
Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
Length = 600
Score = 27.5 bits (58), Expect = 10.0
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 495 FVVGGRLLISLVEFQSRNILRAAALAEI-VLFPVVLIMGIVRSLRLDESVRILLLRDVEV 671
FV + L++L E Q I+ + +I V+F + + G LD + I++ D+E+
Sbjct: 174 FVFQIQELVTLYERQFLEIVDKVVVEDILVIFKLDTLCGTTYKKLLDRCIEIIVKSDIEL 233
Query: 672 RXGPEPVHPQHV 707
E PQH+
Sbjct: 234 -VSLEKSLPQHI 244
>At2g44590.3 68415.m05551 dynamin-like protein D (DL1D) identical to
dynamin-like protein D [Arabidopsis thaliana]
GI:19569770; contains Pfam profiles PF01031: Dynamin
central region, PF00350: Dynamin family, PF02212:
Dynamin GTPase effector domain
Length = 612
Score = 27.5 bits (58), Expect = 10.0
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -1
Query: 529 TREMSRRPPTTNFDQEYQG*SRNTKRRVAAQIKRLAPILTN 407
++ MS PT+ DQ G R VAA IK +A L N
Sbjct: 500 SQNMSLSSPTSAIDQYGDGHFRKIASNVAAYIKMVAETLVN 540
>At2g44590.2 68415.m05550 dynamin-like protein D (DL1D) identical to
dynamin-like protein D [Arabidopsis thaliana]
GI:19569770; contains Pfam profiles PF01031: Dynamin
central region, PF00350: Dynamin family, PF02212:
Dynamin GTPase effector domain
Length = 595
Score = 27.5 bits (58), Expect = 10.0
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -1
Query: 529 TREMSRRPPTTNFDQEYQG*SRNTKRRVAAQIKRLAPILTN 407
++ MS PT+ DQ G R VAA IK +A L N
Sbjct: 483 SQNMSLSSPTSAIDQYGDGHFRKIASNVAAYIKMVAETLVN 523
>At2g44590.1 68415.m05549 dynamin-like protein D (DL1D) identical to
dynamin-like protein D [Arabidopsis thaliana]
GI:19569770; contains Pfam profiles PF01031: Dynamin
central region, PF00350: Dynamin family, PF02212:
Dynamin GTPase effector domain
Length = 596
Score = 27.5 bits (58), Expect = 10.0
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -1
Query: 529 TREMSRRPPTTNFDQEYQG*SRNTKRRVAAQIKRLAPILTN 407
++ MS PT+ DQ G R VAA IK +A L N
Sbjct: 483 SQNMSLSSPTSAIDQYGDGHFRKIASNVAAYIKMVAETLVN 523
>At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)
(FAS1) identical to FAS1 [Arabidopsis thaliana]
GI:4887626
Length = 815
Score = 27.5 bits (58), Expect = 10.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 46 NFNTLNQYGRSKSASRRHWSTKRHPSLE 129
+F + Q G S+S++HW +R P E
Sbjct: 401 HFASWRQLGHLLSSSKKHWGMRRQPKSE 428
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,499,809
Number of Sequences: 28952
Number of extensions: 329915
Number of successful extensions: 1040
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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