Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30663.Seq
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 32 0.076
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.70
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 28 1.6
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 27 2.1
SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom... 27 2.8
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 27 2.8
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac... 27 3.8
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 26 5.0
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 5.0
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 26 5.0
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 25 8.7
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 25 8.7
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 8.7
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 25 8.7
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 32.3 bits (70), Expect = 0.076
Identities = 24/78 (30%), Positives = 38/78 (48%)
Frame = +1
Query: 421 PATMAAPRAVLSIMRGRMTGIPSKSACICTELSSAPSLRRRGVASGARSLQPSRPPRRAS 600
P T AP + +S++ + +P + + +ELSS P+L ++S L P PPR S
Sbjct: 342 PYTHIAPASEMSLIPEKPR-LPPRPSHTLSELSS-PALTSENLSSKPSPLFPPPPPRVKS 399
Query: 601 GDTRPPSAAPDNMLTSSP 654
T P + P + S P
Sbjct: 400 LATNKPVSMPVSTEQSDP 417
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.1 bits (62), Expect = 0.70
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +1
Query: 526 PSLRRRGVASGARSLQPSRP-PRRASGDTRPPSAAPDNMLTSSPFAQTAHHSPGVFSPI 699
P LR G +S A + PS P P + RPP++AP P +A P PI
Sbjct: 110 PKLRHIGKSS-ASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPI 167
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 520 SAPSLRR-RGVASGARSLQPSRPPRRASGDTRPPSAAPDNMLTSSP 654
+APS+ R GA S QP+ R +S T PP +M S+P
Sbjct: 876 AAPSMAPVRSPFPGASSAQPAAMSRTSSVSTLPPPPPTASMTASAP 921
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 550 ASGARSLQPSRPPR-RASGDTRPPSAAPDNMLTSS 651
+ G R S+P +ASG RPP+ A +M TSS
Sbjct: 393 SGGYRMFGHSKPSSYKASGPVRPPNMATGHMRTSS 427
>SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 158
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 485 GIPVIRPLMMESTALGAAIVAGRAMRVW 402
GIP+I P+ L A+ + RA ++W
Sbjct: 131 GIPIIDPVTRAPAVLAGAVSSSRAKQMW 158
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3
Query: 290 WTDTKNEHVNAENQIELLQFCRRDFFSSEPPY 195
W +T+N + N +E+L R+ S P Y
Sbjct: 764 WANTENARYSTSNALEILDMLLREKIESAPRY 795
>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
Ura3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 26.6 bits (56), Expect = 3.8
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Frame = +1
Query: 388 GIVVGHTRIARPATMAAPRAVLSIMRGRMTGIPSKSACICT------ELSS-APSLRRRG 546
G++VG+T + RP T+ + V G ++G P K + T LSS P + G
Sbjct: 330 GVIVGNTTVQRPKTLKSTSHVEE--TGGLSGPPLKPIALNTLRTLRKHLSSDIPIIGCGG 387
Query: 547 VASGARSLQPSR 582
++SG +++ +R
Sbjct: 388 ISSGKDAIEYAR 399
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 5.0
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +1
Query: 514 LSSAPSLRRRGVASGARSLQPSRPPRRASGDTRPPSAAPDNMLTSSPFAQTAHHSPGVFS 693
LSS+ L+ S + L PSRP T P S++ +L+S T ++ S
Sbjct: 233 LSSSSHLQPTSATSSSSRLYPSRP-----APTPPASSSSSPLLSSQTVKTTTSNASRQPS 287
Query: 694 PIWANK 711
P+ ++K
Sbjct: 288 PLVSSK 293
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +1
Query: 574 PSRPPRRASGDTRPPSAAPDNML--TSSPFAQTA-HHSPGVFSPI 699
P PP A PPSAAP + L P TA +PG+ +P+
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAPV 1926
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 666 GLSERTRRQHIVRGRAGRPCV 604
G SER RQ +R RA PCV
Sbjct: 568 GESERAVRQVFLRARASSPCV 588
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 553 RQLLADGGMAQNSVLCRCRLIYWVYQSFVPS*WK 452
+++ +D +Q +V R L+ W++ S PS WK
Sbjct: 162 QRIFSDLQFSQKTVDYRLSLLRWIHLSSWPSNWK 195
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Frame = +2
Query: 671 ITPLASFLQYGRIKAIKCRYKTN----YCL 748
+T A FL + A+KC YK N YCL
Sbjct: 341 VTTPAEFLSHEGHAAVKCSYKANEGQLYCL 370
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 25.4 bits (53), Expect = 8.7
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = +1
Query: 472 MTGIPSKSACICTELSSAPSLRRRGVASGARSLQPSRPPRRAS--GDTRPPSA-APDNML 642
++ IPS S T S A G+ASGA + R S G T S P N+L
Sbjct: 51 LSEIPSSSKSGKTNGSKAAV--ESGLASGAFGNRTGNMNRNTSMSGYTFGSSNFVPYNLL 108
Query: 643 TSSPFAQTAHHSPGVFSP 696
+++P T+H S F P
Sbjct: 109 SNTPSFTTSHSSSTTFVP 126
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +1
Query: 529 SLRRRGVASGARSLQPS--RPPRRASGDTRPPSAAPDNMLTSSPFAQTAHHSPGVFS 693
S R+ + R P P ++A TR P+A + L+ +PF Q S G+ S
Sbjct: 233 STERKSLLVSPRVSSPKLFSPSKQAIMGTRQPNATSGSPLSVTPFLQKTSTSIGLSS 289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,216
Number of Sequences: 5004
Number of extensions: 65493
Number of successful extensions: 189
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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