Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30663.Seq
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44893| Best HMM Match : FGGY_C (HMM E-Value=2.5)                    46   4e-05
SB_34143| Best HMM Match : FGGY_C (HMM E-Value=0.51)                   46   4e-05
SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   4e-05
SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.11 
SB_16229| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.57 
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.3  
SB_21449| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_36817| Best HMM Match : rve (HMM E-Value=6.2e-36)                   29   5.3  
SB_58863| Best HMM Match : Fibrinogen_BP (HMM E-Value=2)               28   7.0  
SB_16259| Best HMM Match : AAA (HMM E-Value=0.43)                      28   9.2  
SB_14677| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.2  
SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)                28   9.2  
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)                 28   9.2  
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)           28   9.2  

>SB_44893| Best HMM Match : FGGY_C (HMM E-Value=2.5)
          Length = 85

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
 Frame = -3

Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRA--MRVW 402
           +Q+QAD+LGI V RP M E+TALGAA+ AG A  + VW
Sbjct: 25  MQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 62


>SB_34143| Best HMM Match : FGGY_C (HMM E-Value=0.51)
          Length = 137

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
 Frame = -3

Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRA--MRVW 402
           +Q+QAD+LGI V RP M E+TALGAA+ AG A  + VW
Sbjct: 25  MQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 62


>SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 566

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
 Frame = -3

Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRA--MRVW 402
           +Q+QAD+LGI V RP M E+TALGAA+ AG A  + VW
Sbjct: 436 MQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 473


>SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1576

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
 Frame = +1

Query: 472 MTGIPSKSACICTELSSAPSLRRRGVASGARSLQPSRPPRRASGDTRPPSAAPDNMLTSS 651
           + GIP+ +     + + AP +   G+   A+ + P  PP        P S     M T +
Sbjct: 227 LAGIPTHNTPTFKQAAKAPLINTLGINPQAKGIIPGHPPNMG-----PASGRTAGMTTVA 281

Query: 652 PFAQTAHH----SPGVFSPIWANKGH 717
           P AQ  +H    SPG+     A K H
Sbjct: 282 PKAQVDNHPANISPGLAGQCKAGKMH 307


>SB_16229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 524

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
 Frame = +2

Query: 548 LPQGRAVCSHRVRHGARLV-THGLPARPLTIC*RRVLSLKPHITPLASFLQY----GRIK 712
           LP+G+A+    +        +   P+RPL +  RRVLSL P  TPLA+ + +    G+++
Sbjct: 137 LPEGKAIDIVLIEQAVNYRRSRKQPSRPLEVLIRRVLSLNP--TPLAALVNFVPSLGKLR 194

Query: 713 AIKCR 727
              C+
Sbjct: 195 NFHCK 199


>SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 526 PSLRRRGVASGARSLQPSRPPRRASGD-TRPPSAAPDNMLTSSPFAQTAHHSPGVFSP 696
           P L++R +    R + PS PP++ S D +R  S +P +  ++S  +    HSP V  P
Sbjct: 472 PFLKQRDLTKKDRPVPPSTPPKKTSPDQSRSRSRSPRSHRSTSR-SPRRRHSPSVSPP 528


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 520  SAPSLRRRGVASG-ARSLQPSRPPRRASGDTRPPSAAPDNMLTSSP 654
            S+P  + +    G +R   PSR  RR+SG +RPPS  P    +SSP
Sbjct: 1916 SSPGQQDQSPRPGRSRVNSPSRDSRRSSGGSRPPS--PVKSRSSSP 1959


>SB_21449| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRAMRVW 402
           +++ + L G  + RP   + + LGAA +AG A  VW
Sbjct: 21  MELTSSLTGQSMDRPSQTDMSVLGAAFLAGMATGVW 56


>SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = +3

Query: 363 QECIGRW--AGYCRGPHTHCATC 425
           QEC+GRW  A + RG H  C  C
Sbjct: 26  QECLGRWNVAQFFRGRHPTCPHC 48


>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3235

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = +1

Query: 508  TELSSAPSLRRRGVASGARSLQPSRPPRRA--SGD-TRPPSAAPDNMLT 645
            T L++ PS R+ G +S A++ +PS PP     +G  +  P+ +P  ++T
Sbjct: 3156 TVLTTLPSSRQAGTSSTAKATRPSVPPEEPVYTGQFSVNPTPSPSTLVT 3204


>SB_36817| Best HMM Match : rve (HMM E-Value=6.2e-36)
          Length = 924

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +1

Query: 466  GRMTGIPSKSACICTELSSAPSLRRRGVASGARSLQPSRPPRRASGDTRPPSAAPD 633
            GR + +  +    C   ++AP + + G   G  +  PS PP   SG   P    PD
Sbjct: 840  GRESTVSLRDLAPCPPQNTAPQMSQEGTFQGQAAPTPSTPP-TDSGLKTPAPILPD 894


>SB_58863| Best HMM Match : Fibrinogen_BP (HMM E-Value=2)
          Length = 1037

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 517 SSAPSLRRRGVASGARSLQPSRPPRRASGDTRPPSAAP 630
           +S+ + RRR +A  ARSL  S P  R  G   P   +P
Sbjct: 632 ASSRAQRRRSLAHSARSLPGSMPSDRDLGRKNPQGRSP 669


>SB_16259| Best HMM Match : AAA (HMM E-Value=0.43)
          Length = 538

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -2

Query: 543 SPTEGWRRTQFCADAG*FTGYTSHSSPHDGKYSPGGGHCRRSRNACVAHD 394
           SP  G+R T F    G  T +   +S H  + S  G      RNACV+ D
Sbjct: 484 SPYLGFRSTSF-TPLG--TAFAYMASVHTRRTSSRGNRLNMRRNACVSQD 530


>SB_14677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +1

Query: 466 GRMTGIPSKSACICTELSSAPSLRRRGVASGARSLQPSRPPRRASGDTRPPSAAPD 633
           GR + +  +    C   ++AP + + G   G  +  P+ PP   SG   P    PD
Sbjct: 244 GRESTVSLRDLASCPPQNTAPQMSQEGTFQGQAAPTPTTPP-TDSGLKTPAPILPD 298


>SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1221

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
 Frame = +1

Query: 526 PSLRRRGVASGARSLQPSRPPR------RASGDTRPPSAAPDNMLTSSPFAQTAHHSP 681
           PS  RR   +G ++  PS+PP       R SG + P  A+P   +  SP    A+ SP
Sbjct: 373 PSSARRTSYTGLQNHTPSKPPMPAKSPGRHSGQSSPRQASPPQSV-KSPIHFQANKSP 429


>SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)
          Length = 820

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 565 SLQPSRPPRRASGDTRPPSAAPDNMLTSSPFAQTAHHSPGVFSP 696
           SL  S PP  +S    PPS   ++    +P + TA+ SP    P
Sbjct: 677 SLVKSSPPGNSSSPGIPPSGPANSFPPVTPTSLTANSSPSGIPP 720


>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
          Length = 921

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 650 LDVSILSGAALGGRVSPDARRGGRD 576
           L+ S+ SG+ LG  VSP A+  GRD
Sbjct: 557 LEESLESGSELGSPVSPPAQPAGRD 581


>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
          Length = 456

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -1

Query: 502 CRLIYWVYQSFVPS*WKVQPWGRPLSQVAQCVCGPRQYPAHRPIHSCRLLPMKNEKCGEF 323
           CR +   +Q  VP+  + Q WG  + +  +C    +Q    R  H  +LL  +  +CGE+
Sbjct: 290 CRQVAVYHQRGVPT-LEEQEWGVGVVEEYKCPTCSQQIRFPRYNHPAKLLETRCGRCGEW 348


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,936,337
Number of Sequences: 59808
Number of extensions: 557568
Number of successful extensions: 1609
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1591
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)