Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30663.Seq
(748 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70753-2|CAA94760.1| 275|Caenorhabditis elegans Hypothetical pr... 34 0.12
U38378-4|AAA79749.1| 502|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical pr... 31 0.87
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z50872-7|CAJ55249.1| 1001|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z50872-6|CAH10768.1| 1039|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z38016-1|CAA86114.1| 856|Caenorhabditis elegans serine/threonin... 28 6.1
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 6.1
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 6.1
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 6.1
AL117207-1|CAB60406.1| 856|Caenorhabditis elegans Hypothetical ... 28 6.1
AF025460-2|AAF02169.3| 545|Caenorhabditis elegans Prion-like-(q... 28 6.1
>Z70753-2|CAA94760.1| 275|Caenorhabditis elegans Hypothetical
protein F40F9.3 protein.
Length = 275
Score = 33.9 bits (74), Expect = 0.12
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +1
Query: 433 AAPRAVLSIMRGRMTGIPSKSACICTELSSAPSLRRRGVASG--ARSLQPSRPPRRASGD 606
AAP V S M G + ACI + + +R + + ++P PPRR
Sbjct: 201 AAPNPVPSAMTKNKEGKGERKACILEDGHKSVMIRMDNEENRNKLKKVEPKEPPRRLDPK 260
Query: 607 TRPPSAAPD 633
T P AAP+
Sbjct: 261 TPPKPAAPE 269
>U38378-4|AAA79749.1| 502|Caenorhabditis elegans Hypothetical
protein R11F4.1 protein.
Length = 502
Score = 33.1 bits (72), Expect = 0.21
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -2
Query: 702 PYWRKDARGVMCGLSERTRRQHI 634
PYW ARG + GL++ T+R+HI
Sbjct: 357 PYWDSTARGTILGLTQVTQREHI 379
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -3
Query: 506 QMQADLLGIPVIRPLMMESTALGAAIVAG 420
++QAD++G ++ P + E + GAA+ G
Sbjct: 425 EIQADIMGRDIVTPKITEISGWGAAVAGG 453
>Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical
protein F25D7.4 protein.
Length = 932
Score = 31.1 bits (67), Expect = 0.87
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +1
Query: 406 TRIARPATMAAPRAVLS-IMRGRMTGIPSKSACICTELSSAPSLRRRGVASGARSLQPSR 582
TR A PA ++APRA+ S G ++SA T + P A+ A S P+R
Sbjct: 312 TRPAVPA-VSAPRALTSRAPAGPARPTTTRSATPATRTAVPPRATAPPKAAPA-SKAPTR 369
Query: 583 PPRRASGDTRPPSAAPDNMLTSSPFAQ 663
P A PP AP + P AQ
Sbjct: 370 APIPARSAPAPPRGAPAKAPKAEPIAQ 396
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/35 (54%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = -3
Query: 617 GGRVSPDARRGGRDGCRLRAP--EATPRR---RRD 528
GG SP ARRGG G R R+P +PRR RRD
Sbjct: 196 GGGGSPAARRGGSAGNRRRSPPRRGSPRRGSPRRD 230
>Z50872-7|CAJ55249.1| 1001|Caenorhabditis elegans Hypothetical
protein C05D12.3c protein.
Length = 1001
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = -1
Query: 538 DGGMAQNSVLCRCRLIYWVYQSFVPS*WKVQPWGRPLSQVAQCVCGPRQYPAHRPIHSCR 359
+GG NS C+C + + K Q WG P +CVC P Y + I CR
Sbjct: 25 NGGTPINSTACQCPAFVAGERCEIV---KCQRWGIPDKD--RCVCAPGWYDKYCGIRGCR 79
>Z50872-6|CAH10768.1| 1039|Caenorhabditis elegans Hypothetical
protein C05D12.3a protein.
Length = 1039
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = -1
Query: 538 DGGMAQNSVLCRCRLIYWVYQSFVPS*WKVQPWGRPLSQVAQCVCGPRQYPAHRPIHSCR 359
+GG NS C+C + + K Q WG P +CVC P Y + I CR
Sbjct: 25 NGGTPINSTACQCPAFVAGERCEIV---KCQRWGIPDKD--RCVCAPGWYDKYCGIRGCR 79
>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical protein
C27H6.1 protein.
Length = 1657
Score = 28.7 bits (61), Expect = 4.6
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Frame = +1
Query: 451 LSIMRGRMTGIPSKSACICTELSSAPSLRRRGVASGA--RSLQPSRPPRRASGDTR--PP 618
++ MR M + E+ AP +RR AS R + ++ SG + PP
Sbjct: 846 MASMRSDMADWKAPEMIPVKEIKKAPEIRRVDSASAIPPRKRSSIKDVQQDSGGSLELPP 905
Query: 619 S-AAPDNMLTSSPFAQTAHHSPGVFSPIWAN 708
AAP + + +P A P + +P WA+
Sbjct: 906 HLAAPQDSIAPNPKGDHAPDDPILSAPAWAD 936
>Z38016-1|CAA86114.1| 856|Caenorhabditis elegans serine/threonine
kinase protein.
Length = 856
Score = 28.3 bits (60), Expect = 6.1
Identities = 24/73 (32%), Positives = 35/73 (47%)
Frame = +1
Query: 481 IPSKSACICTELSSAPSLRRRGVASGARSLQPSRPPRRASGDTRPPSAAPDNMLTSSPFA 660
+PS S I E + +P L R + + SL P+RA G T+ S P + SP
Sbjct: 280 LPSPSKRIL-ESARSPLLANRRIITPQSSLPV---PKRA-GSTKLDSPTPVRRIGESPRV 334
Query: 661 QTAHHSPGVFSPI 699
Q +PG+ SP+
Sbjct: 335 QRRVITPGMPSPV 347
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = +1
Query: 511 ELSSAPSLRRRGVASGARSL---QPSRPPRRA--SGDTRPPSAAPDNMLTSS 651
E AP + R ++ A L QP PPRR+ SGDT P P L S
Sbjct: 2345 EAPIAPPRKGRSLSRDAERLLEIQPRAPPRRSRQSGDTLSPEPTPVLTLVKS 2396
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = +1
Query: 511 ELSSAPSLRRRGVASGARSL---QPSRPPRRA--SGDTRPPSAAPDNMLTSS 651
E AP + R ++ A L QP PPRR+ SGDT P P L S
Sbjct: 2345 EAPIAPPRKGRSLSRDAERLLEIQPRAPPRRSRQSGDTLSPEPTPVLTLVKS 2396
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = +1
Query: 511 ELSSAPSLRRRGVASGARSL---QPSRPPRRA--SGDTRPPSAAPDNMLTSS 651
E AP + R ++ A L QP PPRR+ SGDT P P L S
Sbjct: 2345 EAPIAPPRKGRSLSRDAERLLEIQPRAPPRRSRQSGDTLSPEPTPVLTLVKS 2396
>AL117207-1|CAB60406.1| 856|Caenorhabditis elegans Hypothetical
protein Y60A3A.1 protein.
Length = 856
Score = 28.3 bits (60), Expect = 6.1
Identities = 24/73 (32%), Positives = 35/73 (47%)
Frame = +1
Query: 481 IPSKSACICTELSSAPSLRRRGVASGARSLQPSRPPRRASGDTRPPSAAPDNMLTSSPFA 660
+PS S I E + +P L R + + SL P+RA G T+ S P + SP
Sbjct: 280 LPSPSKRIL-ESARSPLLANRRIITPQSSLPV---PKRA-GSTKLDSPTPVRRIGESPRV 334
Query: 661 QTAHHSPGVFSPI 699
Q +PG+ SP+
Sbjct: 335 QRRVITPGMPSPV 347
>AF025460-2|AAF02169.3| 545|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 41
protein.
Length = 545
Score = 28.3 bits (60), Expect = 6.1
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Frame = +1
Query: 415 ARPATMAAPRAVLSIMRGRMTGIPSKSACICTEL--SSAPSLRRRGVASGARSLQPSRPP 588
A PA+ APRA G G S SA + SS+ ++ +S PS PP
Sbjct: 32 AAPASAPAPRA------GAGAGATSSSAASSSTSTPSSSSHHKKSSPPHHQKSAAPSAPP 85
Query: 589 RRASGDTRPPSAAPDNMLTSSP 654
R + PP A + +P
Sbjct: 86 RDVTSAHAPPPPASSAPIVGAP 107
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,399,872
Number of Sequences: 27780
Number of extensions: 402980
Number of successful extensions: 1185
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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