BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= psV30663.Seq (748 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 29 0.035 AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 27 0.14 AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 22 5.3 L10433-1|AAA27732.1| 149|Apis mellifera transposase protein. 21 9.3 AY703685-1|AAU12681.1| 200|Apis mellifera abdominal-A protein. 21 9.3 AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase pr... 21 9.3 >AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice variant B protein. Length = 810 Score = 29.5 bits (63), Expect = 0.035 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 4/50 (8%) Frame = +1 Query: 574 PSRP--PRRASGDTRPPS--AAPDNMLTSSPFAQTAHHSPGVFSPIWANK 711 PS P PR S T P S AP+ L S P T + G+FS ++A K Sbjct: 649 PSMPLLPRPISCHTTPDSFIEAPNKTLPSLPSTLTKNSKQGLFSKLFAKK 698 >AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. Length = 554 Score = 27.5 bits (58), Expect = 0.14 Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 1/98 (1%) Frame = +1 Query: 400 GHTRIARPATMAAPRAVLSIM-RGRMTGIPSKSACICTELSSAPSLRRRGVASGARSLQP 576 GH ++ RP+ A A S G + P+ S +S S G A L Sbjct: 216 GHAQMGRPSYTTATMATTSTPGSGSLPASPADSG-----VSDVESSTSSGGNEDANLLLK 270 Query: 577 SRPPRRASGDTRPPSAAPDNMLTSSPFAQTAHHSPGVF 690 +R +S PS A + SS ++A HSPGV+ Sbjct: 271 ARLNPNSS---LQPSLASHHSHLSSALGRSACHSPGVY 305 >AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. Length = 898 Score = 22.2 bits (45), Expect = 5.3 Identities = 9/21 (42%), Positives = 12/21 (57%) Frame = -1 Query: 433 PLSQVAQCVCGPRQYPAHRPI 371 P S +A CVC + HRP+ Sbjct: 97 PNSTIAVCVCMRKCPRRHRPV 117 >L10433-1|AAA27732.1| 149|Apis mellifera transposase protein. Length = 149 Score = 21.4 bits (43), Expect = 9.3 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -1 Query: 112 TSKASLYFKKVLIYL*LCYNNVV 44 TSKA ++ KKVL+ + Y +V Sbjct: 56 TSKAGIHRKKVLLSVWWDYKGIV 78 >AY703685-1|AAU12681.1| 200|Apis mellifera abdominal-A protein. Length = 200 Score = 21.4 bits (43), Expect = 9.3 Identities = 11/32 (34%), Positives = 13/32 (40%) Frame = -3 Query: 653 GLDVSILSGAALGGRVSPDARRGGRDGCRLRA 558 G + S AAL + DA G CR A Sbjct: 121 GFGSTAASSAALAAAAAVDAATAGDKSCRYTA 152 >AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase protein. Length = 342 Score = 21.4 bits (43), Expect = 9.3 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -1 Query: 112 TSKASLYFKKVLIYL*LCYNNVV 44 TSKA ++ KKVL+ + Y +V Sbjct: 178 TSKAGIHRKKVLLSVWWDYKGIV 200 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 213,277 Number of Sequences: 438 Number of extensions: 5259 Number of successful extensions: 12 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 12 length of database: 146,343 effective HSP length: 56 effective length of database: 121,815 effective search space used: 23388480 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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