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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30663.Seq
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    29   0.035
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                27   0.14 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.3  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   9.3  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   9.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.3  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 29.5 bits (63), Expect = 0.035
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +1

Query: 574 PSRP--PRRASGDTRPPS--AAPDNMLTSSPFAQTAHHSPGVFSPIWANK 711
           PS P  PR  S  T P S   AP+  L S P   T +   G+FS ++A K
Sbjct: 649 PSMPLLPRPISCHTTPDSFIEAPNKTLPSLPSTLTKNSKQGLFSKLFAKK 698


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
 Frame = +1

Query: 400 GHTRIARPATMAAPRAVLSIM-RGRMTGIPSKSACICTELSSAPSLRRRGVASGARSLQP 576
           GH ++ RP+   A  A  S    G +   P+ S      +S   S    G    A  L  
Sbjct: 216 GHAQMGRPSYTTATMATTSTPGSGSLPASPADSG-----VSDVESSTSSGGNEDANLLLK 270

Query: 577 SRPPRRASGDTRPPSAAPDNMLTSSPFAQTAHHSPGVF 690
           +R    +S     PS A  +   SS   ++A HSPGV+
Sbjct: 271 ARLNPNSS---LQPSLASHHSHLSSALGRSACHSPGVY 305


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 433 PLSQVAQCVCGPRQYPAHRPI 371
           P S +A CVC  +    HRP+
Sbjct: 97  PNSTIAVCVCMRKCPRRHRPV 117


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 112 TSKASLYFKKVLIYL*LCYNNVV 44
           TSKA ++ KKVL+ +   Y  +V
Sbjct: 56  TSKAGIHRKKVLLSVWWDYKGIV 78


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -3

Query: 653 GLDVSILSGAALGGRVSPDARRGGRDGCRLRA 558
           G   +  S AAL    + DA   G   CR  A
Sbjct: 121 GFGSTAASSAALAAAAAVDAATAGDKSCRYTA 152


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 112 TSKASLYFKKVLIYL*LCYNNVV 44
           TSKA ++ KKVL+ +   Y  +V
Sbjct: 178 TSKAGIHRKKVLLSVWWDYKGIV 200


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,277
Number of Sequences: 438
Number of extensions: 5259
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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