Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30661.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)               30   1.6  
SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
          Length = 690

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 662 SFKMFLGPKYDENGFPFSLEDNWMNFYELXWFVQKVNPGQXQITRSSTD 516
           S  ++  PK  ++  P S+ D WM+ +E   FV+K+N        S TD
Sbjct: 250 SVLVWRAPKSSQDALPVSITDRWMSQHE---FVEKLNMQAVLCASSHTD 295


>SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -3

Query: 414 PSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYP 271
           PS ++ P+  Y G+PFQ     YP  P P     F  + P + P  YP
Sbjct: 169 PSPVLSPQ-VYRGYPFQ-----YPGTPPPPMYPAFPPIFPSSPPPEYP 210


>SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -1

Query: 680 MLXLTPSFKMFLGPKYDENGFPFSLEDNWMNFYELXWFVQKVNPGQXQITRS 525
           M+  TP   M  GP    NGF  SL+ ++ + ++      K  PG   +T S
Sbjct: 218 MMYSTPYHPMHSGPHDPRNGFNQSLDMSYGSAHQQTLVPGKYGPGNGGVTDS 269


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,314,125
Number of Sequences: 59808
Number of extensions: 334766
Number of successful extensions: 670
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)