Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30660.Seq
(738 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0030 - 14083117-14083166,14083620-14083689,14083777-140838... 81 9e-16
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999... 35 0.059
03_06_0626 - 35169352-35169546,35169736-35169948,35170102-351702... 31 0.95
07_01_1055 - 9253936-9254130,9254271-9254483,9254588-9254758,925... 31 1.3
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133... 31 1.3
01_06_1731 + 39516897-39517632,39517744-39517912,39517985-395184... 31 1.3
11_01_0661 - 5387194-5388486 29 3.9
10_05_0103 - 9186758-9187345,9187395-9187951,9188265-9188376 29 3.9
06_03_0843 + 25315089-25315417,25317274-25317310,25317439-253176... 29 3.9
06_01_0394 - 2835438-2835896,2836664-2836913,2837197-2837669,283... 29 3.9
02_05_1073 - 33895608-33895880,33896133-33896180,33896273-338965... 29 3.9
02_01_0677 - 5039344-5039793,5040415-5040462,5040540-5040776,504... 29 3.9
06_01_0207 + 1579343-1579529,1579610-1579659,1579896-1580092,158... 29 5.1
12_01_1059 - 10934937-10935446,10938224-10938271,10938383-109386... 28 6.7
04_01_0167 + 1864956-1865495 28 6.7
03_01_0370 - 2879469-2879639,2880071-2880172,2881415-2881515,288... 28 6.7
09_02_0249 + 6240237-6240287,6241489-6241764 28 8.9
08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224 28 8.9
06_03_0849 - 25344261-25344416,25344652-25344808,25344917-253450... 28 8.9
>02_03_0030 -
14083117-14083166,14083620-14083689,14083777-14083857,
14083940-14084065,14084916-14085143,14085246-14085325,
14086567-14086768,14086857-14086946
Length = 308
Score = 81.0 bits (191), Expect = 9e-16
Identities = 33/77 (42%), Positives = 54/77 (70%)
Frame = +3
Query: 255 HMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEEEAVREVQE 434
H+K + F+RP+S+N+ L R L P++ Y ++FSNV+ I+ LA+ DE+E V++VQE
Sbjct: 66 HLKAVYFLRPSSDNVQKLRRHLAAPRFAEYHLFFSNVLKIPQIQVLADSDEQEVVQQVQE 125
Query: 435 VFADYLAVDRHLFSFNI 485
+AD+ A+D + F+ NI
Sbjct: 126 FYADFCAIDPYHFTLNI 142
Score = 58.8 bits (136), Expect = 4e-09
Identities = 26/57 (45%), Positives = 43/57 (75%)
Frame = +1
Query: 61 MNVIQAVKMYITKMTEESGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
M +I ++ YI +M + PGMKV+++D +T +VS+VYSQS++L+KEV+L E +D+
Sbjct: 1 MTLITLIRDYIDRMLHDI-PGMKVLVLDPDTVGMVSVVYSQSDLLRKEVFLVETVDN 56
Score = 27.9 bits (59), Expect = 8.9
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = +2
Query: 515 QQHLQRVSQGXXXXXXXXKRRACVRYEAASEPCARLA-EKVRDLLRXEAVLIDN*HPLXT 691
Q R G KRR +RY+ S+ R+A E R + E+ L D T
Sbjct: 160 QSFCDRAVDGIASVFLALKRRPVIRYQRTSDVAKRIAQETARLMYEQESGLFDF---RRT 216
Query: 692 ESCPLLQLADHR 727
E+ LL + D R
Sbjct: 217 ENSSLLLVIDRR 228
>04_03_0037 -
9991176-9991268,9991403-9991474,9991569-9991928,
9992466-9992555,9992692-9992782,9993530-9993729,
9998024-9998101,9998196-9998312,10000017-10000112,
10000192-10000317,10000533-10000629,10000979-10001023,
10002106-10002179,10002267-10002350,10002439-10002522,
10002660-10002851,10003775-10003903,10004061-10004093,
10004190-10004286,10004833-10004883,10005211-10005289,
10005480-10005552,10005595-10005691,10006392-10006473,
10008345-10008691,10010271-10010535,10010624-10010743,
10010971-10011358
Length = 1219
Score = 35.1 bits (77), Expect = 0.059
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +3
Query: 258 MKCIVFIRPTSENIALLSREL--RDPKYGVYFIYFSNVVSKADIKTLAECDEEEA-VREV 428
M I FI+PT ENI + ++ + P Y +++FS+ V + + + + A + +
Sbjct: 472 MDAIYFIQPTKENIRIFMSDMSGKIPLYKKAYVFFSSPVQRELVAQIKKDSNVRARIGAL 531
Query: 429 QEVFADYLAVDRHLFS 476
E+ +Y A+D F+
Sbjct: 532 SEMNLEYFAIDSQGFT 547
>03_06_0626 -
35169352-35169546,35169736-35169948,35170102-35170272,
35170826-35170942,35171078-35171233
Length = 283
Score = 31.1 bits (67), Expect = 0.95
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = -2
Query: 617 ERRVLMLPRSER-RLAASETGGAPADLEKLVGDAVGSNPTLEASNNIEREQVSVHSQVVS 441
ER ++ ++E+ + +A A +L+G+A+ +NP A IE + H+ S
Sbjct: 198 ERAKFIVEKAEQDKRSAIIRAQGEAKSAQLIGEAINNNPAFLALRQIEAAREISHTMASS 257
Query: 440 KN--FLDLSDSLL 408
N +LD D LL
Sbjct: 258 NNKVYLDSKDLLL 270
>07_01_1055 -
9253936-9254130,9254271-9254483,9254588-9254758,
9255743-9255859,9257021-9257186,9258885-9258934,
9259095-9259268
Length = 361
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = -2
Query: 617 ERRVLMLPRSER-RLAASETGGAPADLEKLVGDAVGSNPTLEASNNIE--REQVSVHSQV 447
ER ++ ++E+ + +A A +L+G A+ +NP A IE RE S
Sbjct: 276 ERAKFIVEKAEQDKRSAIIRAQGEAKSAELIGQAIANNPAFLALRQIEAAREISHTMSSS 335
Query: 446 VSKNFLDLSDSLL 408
+K FLD +D LL
Sbjct: 336 ANKVFLDSNDLLL 348
>03_06_0437 -
33912326-33912520,33912870-33912998,33913147-33913317,
33913877-33913993,33914150-33914800
Length = 420
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -2
Query: 572 ASETGGAPADLEKLVGDAVGSNPTLEASNNIEREQVSVHSQVVSKN--FLDLSDSLL 408
A E A +L+G+A+ +NP A IE + H+ S N +LD D LL
Sbjct: 351 AIEAKQGEAKSAQLIGEAINNNPAFLALRQIEAAREISHTMARSNNKVYLDSKDLLL 407
>01_06_1731 +
39516897-39517632,39517744-39517912,39517985-39518488,
39518619-39518747,39519849-39519990,39520082-39520453
Length = 683
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/55 (41%), Positives = 27/55 (49%)
Frame = +1
Query: 502 VGLEPTASPTSFSRSAGAPPVSEAASLRSLRGSIRTLRSSRGEGPRSAEXGSCAH 666
VG P S S A +PP S AAS+ L + T SS G+G SA S AH
Sbjct: 602 VGRSPAPSSAS---GASSPPKSCAASVDPLAQELMTAPSSSGDGASSAS-SSNAH 652
>11_01_0661 - 5387194-5388486
Length = 430
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Frame = +1
Query: 484 LLDASKVGLEPTASPTSFSRSAGAPPVSE----AASLRSLR--GSIRTLRSSRGEGPRSA 645
+L + G+ PT A P S AA R LR GS+R + G GPR A
Sbjct: 20 VLAGGRRGIHFVPGPTEDEEEEHATPPSRRWYRAAYARLLRLAGSLRGVERGDGGGPRHA 79
Query: 646 EXGS 657
E GS
Sbjct: 80 ETGS 83
>10_05_0103 - 9186758-9187345,9187395-9187951,9188265-9188376
Length = 418
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Frame = +3
Query: 285 TSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDE---EEAVREVQEVFADYLA 455
T ++ A+L R+ D +YG YFS + + E VRE+ + +D
Sbjct: 156 TLDSAAILFRDGFDEEYGNTINYFSKRKPPVPLSPPDPMELGFLRETVRELTSIMSDEWL 215
Query: 456 VDRHLFSFNIVGCLQGRVGTNSISNEF 536
+ L S L VG N +S F
Sbjct: 216 REAELSSEGTTSSLSPTVGANLVSESF 242
>06_03_0843 +
25315089-25315417,25317274-25317310,25317439-25317675,
25317745-25317792,25318144-25318577,25318675-25318759
Length = 389
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 566 ETGGAPADLEKLVGDAVGSNPTLEASNNIER-EQVSVHSQVVS 441
ET GA + L G +VGS PTL+ ++ + V +HS ++S
Sbjct: 141 ETYGATEENIILYGQSVGSGPTLDLASRLPHLRAVVLHSPILS 183
>06_01_0394 -
2835438-2835896,2836664-2836913,2837197-2837669,
2838941-2840608
Length = 949
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Frame = +1
Query: 352 ISVM*FLRQTSKLWPNVMKRRLSERSRKFLLTTWLWTD-------TCSLSILLDASKVGL 510
++++ +L + L P +RRL K + WL T SLS L+ A ++G
Sbjct: 645 VTIVLWLSLAALLSPGEKERRLRSSLSKASMAVWLLVAVVLATNYTASLSSLMTAQRLGR 704
Query: 511 EPTASPTSFSRSAGA 555
E + S +AGA
Sbjct: 705 EAAVTAESLRSAAGA 719
>02_05_1073 -
33895608-33895880,33896133-33896180,33896273-33896509,
33897233-33897269,33898603-33898913
Length = 301
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -2
Query: 560 GGAPADLEKLVGDAVGSNPTLEASNNIER-EQVSVHSQVVS 441
G P DL L G +VGS PTL ++ +E+ V +HS ++S
Sbjct: 138 GIEPEDLI-LYGQSVGSGPTLHLASRLEKLRGVVLHSAILS 177
>02_01_0677 -
5039344-5039793,5040415-5040462,5040540-5040776,
5040862-5040898,5042474-5042491,5042801-5043153
Length = 380
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 566 ETGGAPADLEKLVGDAVGSNPTLEASNNIER-EQVSVHSQVVS 441
ET GA + L G +VGS PTL+ ++ + V +HS ++S
Sbjct: 155 ETYGASEENIILYGQSVGSGPTLDLASRLPHLRAVVLHSPILS 197
>06_01_0207 +
1579343-1579529,1579610-1579659,1579896-1580092,
1580343-1580469,1580562-1580693
Length = 230
Score = 28.7 bits (61), Expect = 5.1
Identities = 22/84 (26%), Positives = 32/84 (38%)
Frame = -2
Query: 701 GSSPXIRDANYL*AQLPSSADRGPSPRDERRVLMLPRSERRLAASETGGAPADLEKLVGD 522
G R+ NY A R P P +R + LP RRL A + + + GD
Sbjct: 3 GKGQRRREKNYRAAH--GGESRLPPPPKQRELDALPSKLRRLIAIQEKHKGGEKGAVAGD 60
Query: 521 AVGSNPTLEASNNIEREQVSVHSQ 450
+ G +A+ N R+ Q
Sbjct: 61 SSGKQGESDAAKNKARKDKKTKKQ 84
>12_01_1059 -
10934937-10935446,10938224-10938271,10938383-10938619,
10938711-10938747,10941018-10941286
Length = 366
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 566 ETGGAPADLEKLVGDAVGSNPTLEASNNIER-EQVSVHSQVVS 441
E GA + L G +VGS PT++ ++ + R V +HS ++S
Sbjct: 121 ENFGAKEEEIILYGQSVGSGPTVDLASRLHRLRAVVLHSPILS 163
>04_01_0167 + 1864956-1865495
Length = 179
Score = 28.3 bits (60), Expect = 6.7
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 544 SAGAPPVSEAASLRSLRGSIRTLRSSRGEGPRSAEXGSCAHR*LASL-XNGELPP 705
+AG PP S AASLRS ++ + R G RS+ HR +L GEL P
Sbjct: 39 AAGGPPSSHAASLRS---TLPPCSTPRRAGQRSSTAAPRHHRPSPALHVVGELVP 90
>03_01_0370 -
2879469-2879639,2880071-2880172,2881415-2881515,
2881788-2882016
Length = 200
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/39 (46%), Positives = 18/39 (46%)
Frame = -2
Query: 656 LPSSADRGPSPRDERRVLMLPRSERRLAASETGGAPADL 540
LPSS RG PR RR RS RL A P DL
Sbjct: 22 LPSSPLRGGRPRSPRRCRFGSRSLHRLRARAGKDDPEDL 60
>09_02_0249 + 6240237-6240287,6241489-6241764
Length = 108
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 328 GSLSSRDNRAMFSDVGRIKTMHFMCSCYPIW 236
G+ +SR N A D+ R +T MC+ P W
Sbjct: 42 GTKNSRHNSATGMDLSRAQTSGSMCAAQPHW 72
>08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224
Length = 787
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +1
Query: 523 SPTSFSRSAGAPPVSEAASLRSLRGSIRTLR 615
SP RS+G+ P+ EAA L S SIR R
Sbjct: 10 SPRLKRRSSGSDPLEEAAGLTSDSSSIRRCR 40
>06_03_0849 -
25344261-25344416,25344652-25344808,25344917-25345056,
25345160-25345295,25345392-25345663,25345809-25346068,
25346716-25347035,25347287-25347352,25347439-25347510,
25347609-25347680,25347776-25347858,25348068-25348139,
25348389-25348485,25348918-25349050,25349158-25349236
Length = 704
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 494 ASNNIEREQVSVHSQVVSKNFLDLSDSLLFITFGQSF 384
A NN S +VS N+L+LS +LLF G+ F
Sbjct: 134 AGNNFSGNLPYSISNMVSLNYLNLSHNLLFQEIGEMF 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,988,312
Number of Sequences: 37544
Number of extensions: 385741
Number of successful extensions: 1181
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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