Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30660.Seq
(738 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49958| Best HMM Match : Mak10 (HMM E-Value=7.7) 99 3e-21
SB_41402| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_28946| Best HMM Match : Occludin_ELL (HMM E-Value=0.27) 31 1.3
SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2) 29 3.0
SB_6636| Best HMM Match : COX7C (HMM E-Value=1.8) 29 3.0
SB_34467| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3) 29 5.2
SB_12344| Best HMM Match : ATP-synt_B (HMM E-Value=1.9) 29 5.2
SB_44193| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-12) 28 6.9
SB_32608| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_49958| Best HMM Match : Mak10 (HMM E-Value=7.7)
Length = 176
Score = 99.1 bits (236), Expect = 3e-21
Identities = 46/57 (80%), Positives = 52/57 (91%)
Frame = +1
Query: 61 MNVIQAVKMYITKMTEESGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
MNVI AVK Y+TKM EESG GMKV+LMDKETT IVSMVYSQ+E+LQKEVYLFER+D+
Sbjct: 1 MNVILAVKQYVTKMIEESGAGMKVLLMDKETTGIVSMVYSQTEVLQKEVYLFERVDT 57
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = +3
Query: 375 ADIKTLAECDEEEAVREVQEVFADYLAVDRHLFSFN 482
A I+ LAE D++E VREVQE +ADY A+ H+FS N
Sbjct: 77 ASIRALAEADDQEVVREVQEYYADYFAISPHVFSLN 112
>SB_41402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/77 (19%), Positives = 35/77 (45%)
Frame = +1
Query: 25 ILCEINKDNLIKMNVIQAVKMYITKMTEESGPGMKVILMDKETTSIVSMVYSQSEILQKE 204
++CE+ KD+ K + V + + K E G ++ TT + + ++E+++
Sbjct: 15 LICELGKDDFKKTGLPMCVAIKLQKAIESLDKGKELKTSLDSTTIKANKILKKTELIELS 74
Query: 205 VYLFERIDSHAKWDNMN 255
E +++ W+ N
Sbjct: 75 KKSLEAQFANSNWNEFN 91
>SB_28946| Best HMM Match : Occludin_ELL (HMM E-Value=0.27)
Length = 396
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/80 (28%), Positives = 37/80 (46%)
Frame = -2
Query: 653 PSSADRGPSPRDERRVLMLPRSERRLAASETGGAPADLEKLVGDAVGSNPTLEASNNIER 474
PSSA PS + E L +R ++S + +PA+ ++ + V +N NN+ +
Sbjct: 242 PSSAKTSPSKKQEPPAL----GNKRQSSSISYASPANKKQRIAHVVNTN------NNVSK 291
Query: 473 EQVSVHSQVVSKNFLDLSDS 414
E HS +K D S S
Sbjct: 292 ENPEAHSVNNTKRHYDTSPS 311
>SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2)
Length = 238
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -1
Query: 180 TVHHTHYAGSFFIH*YHFHSRAALFRHFSNVHFNCLY--HIHFD*IILI 40
++HH + +F H Y++H + + H + H + Y H H D I+I
Sbjct: 79 SIHHRYR--DYFYHSYNYHHKWQHYHHHHHYHHHLDYDHHYHHDLFIII 125
>SB_6636| Best HMM Match : COX7C (HMM E-Value=1.8)
Length = 237
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 436 FLLTTWLWTDTCSLSILLDASKVGLEPTASPTS 534
F L WLWT T SL+ D +VG + A +S
Sbjct: 15 FALYLWLWTSTASLTEAKDNLRVGCDTKAYRSS 47
>SB_34467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 524
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -2
Query: 164 TMLVVSLSINITFIPGPLSSVILVMYIL--TACITFILIKLSLFIS 33
T + SLS ++TF+ GPL++ + Y + A + IL L LF S
Sbjct: 57 TAWIASLSFSLTFMLGPLTTSLCTKYGVRSVAVLGAILFALGLFCS 102
>SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3)
Length = 356
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -1
Query: 192 DFRLTVHHTHYAGSFFIH*YHFHSRAALFRHFSNVHFNCLYHIHFD 55
D+ H+ +Y + + YH+H H+ + H++ YH H+D
Sbjct: 303 DYYYHYHYYYYYDYHYHYDYHYHYDYHYDYHY-DYHYHYDYHYHYD 347
>SB_12344| Best HMM Match : ATP-synt_B (HMM E-Value=1.9)
Length = 341
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -3
Query: 334 YLGSLSSRDNRAM---FSDVGRIKTMHFMCSCYPIWHDCLSSRISKLPSVRFPID 179
YL SL R + ++ + + GR+ T+ +P + D ++ IS++P V P+D
Sbjct: 207 YLRSLRKRQDMSVNTTWPNFGRVTTLVAQDMTFPSYDDVINDVISRVPFVDPPLD 261
>SB_44193| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-12)
Length = 863
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = -2
Query: 149 SLSINITFIPGPLSSVILV--MYILTACITFILIKLSLFISQS 27
+L++ F+P + S+++V +YIL C T + + + L+I S
Sbjct: 246 TLALLCVFLPPYVPSIMIVWWVYILAICTTMVALHMRLYIISS 288
>SB_32608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 909
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 493 ASKVGLEPTASPTSFSRSAGAPPVSEAASLRSLRGSIRTLRSSR 624
+ ++GL + S +S R+ APP ++A LRS RT S+R
Sbjct: 436 SDRLGLLASPSSSSEMRAGLAPPENDAVVLRSATFRRRTFGSTR 479
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,707,811
Number of Sequences: 59808
Number of extensions: 434160
Number of successful extensions: 1146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -