Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30660.Seq
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   1.3  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.1  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 517 TASPTSFSRSAGAPPVSEA 573
           TAS  +  RSAG+P VSE+
Sbjct: 187 TASSRNSDRSAGSPSVSES 205


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 433 KFLLTTWLWTDTCSLSILLDASKVGLEPTASPTSFSR 543
           +FL+T        S  ++ +   + +EP  SP +F R
Sbjct: 177 QFLITNTSGPGVVSNPMIAELETLSVEPKVSPMTFCR 213


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 433 KFLLTTWLWTDTCSLSILLDASKVGLEPTASPTSFSR 543
           +FL+T        S  ++ +   + +EP  SP +F R
Sbjct: 177 QFLITNTSGPGVVSNPMIAELETLSVEPKVSPMTFCR 213


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 176 YTILTMLVVSLSINIT 129
           Y + TM++V+LSI IT
Sbjct: 315 YLLFTMILVTLSIWIT 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,970
Number of Sequences: 438
Number of extensions: 4265
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)