Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30659.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    85   6e-18
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    60   2e-10
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   2.7  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    27   2.7  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    26   4.8  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    25   6.3  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    25   8.4  

>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 85.4 bits (202), Expect = 6e-18
 Identities = 38/88 (43%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
 Frame = +1

Query: 1   SVKVHPVVLFQIVDAYERRNADSHRVIGTLLGT--SDKGVVEVTNCFCVPHKEHADQVEA 174
           ++ + P VLF I+D   R++ ++ RVIGTLLGT   D   +E+ +CF VPH E ++QVE 
Sbjct: 22  NIVIEPAVLFSILDHSTRKSENNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVEV 81

Query: 175 ELNYAMDVYELNRRVNSSESIVGWWATA 258
           E+ Y   +Y L+ + N  E +VGW+AT+
Sbjct: 82  EMEYHRAMYHLHLKANPREVVVGWYATS 109


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
 Frame = +1

Query: 4   VKVHPVVLFQIVDAYERR-NADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA-- 174
           V VHP+VL   VD+Y R       RV+G LLG ++  VV V N + +P +E         
Sbjct: 17  VIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWF 76

Query: 175 -ELNYAMDVYELNRRVNSSESIVGWWAT 255
            + N+   + E+ +++N++E +VGW+ T
Sbjct: 77  LDHNFMESMNEMFKKINANEKLVGWYHT 104


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 46  YERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE 171
           Y+ R  DSHR I  L GT  +  +   +   + +K H  ++E
Sbjct: 483 YDHRLRDSHREIYQLQGTGYRPFLRANDNASINNKNHHKELE 524


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -3

Query: 428 SEHATLLSIWHSQWYTNICT*THSTSSQRSVQSNMDXLTAFTGI 297
           S  A +L  +   W+ N+      T S+RS+ +N D +T+F+ +
Sbjct: 410 SAKARILDSFCIDWHLNV-----QTMSERSILTNRDFITSFSAV 448


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 57  KCRFSQSYRHLIGHERQRSGG-SNQLLLRATQRTCRSSRSGT*LRDGCL 200
           + R S SY   I  ++  SGG + + L  A  RTC  S + T L + CL
Sbjct: 201 RSRSSSSYS--INKKKGTSGGQATRHLTYALSRTCSQSSNTTSLLESCL 247


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +2

Query: 419 HVHSCRCHSHM 451
           H+H CRCH+++
Sbjct: 69  HIHCCRCHTYI 79


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 367 KPIRPPASEVSRVTWTXSRHSRE*YSCITEEWLVTSLPSPTNQQYFQR 224
           KP  PP S++SR   T S  S E   C     + T+ PS T+ +   R
Sbjct: 566 KPFHPPISKISRTRLTVS--SPERLYCAKPISMATA-PSETDSKLINR 610


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,467,011
Number of Sequences: 5004
Number of extensions: 51584
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)