Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30659.Seq
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23... 79 4e-15
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 59 3e-09
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 49 3e-06
01_06_1086 - 34421837-34422311,34422426-34422612,34423162-344232... 29 2.8
11_01_0433 - 3323372-3324616,3324708-3324905 28 4.9
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834... 28 6.5
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 28 6.5
08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-65... 27 8.6
07_01_0780 + 6047375-6047494,6047603-6047713,6047804-6047926,604... 27 8.6
>05_01_0034 -
228939-229028,229117-229230,229309-229430,229827-230056,
230458-230537,230641-230859
Length = 284
Score = 78.6 bits (185), Expect = 4e-15
Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 SVKVHPVVLFQIVDAYERRNADSHRVIGTLLGTS-DKGVVEVTNCFCVPHKEHADQVEAE 177
S +V VV+F I D+Y RR + RVIGTLLG+ G V V N + VPH E DQV +
Sbjct: 18 SARVEAVVVFNICDSYVRRPDQAERVIGTLLGSVLPDGTVHVRNSYVVPHNESPDQVALD 77
Query: 178 LNYAMDVYELNRRVNSSESIVGWWAT 255
+ Y ++Y + +VN E IVGW++T
Sbjct: 78 IEYHHNMYASHHKVNPKEVIVGWFST 103
Score = 50.8 bits (116), Expect = 8e-07
Identities = 23/81 (28%), Positives = 42/81 (51%)
Frame = +3
Query: 255 GNEVTNHSSVIHEYYSRECREXVHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQGCMFTPV 434
G V+ S++IH++YSRE + +H+T+DT G ++AY+ L + + F +
Sbjct: 104 GFGVSGGSTLIHDFYSREVQSPIHLTVDTGFTRGDASIKAYISSNLSLGDRHLAAQFQEI 163
Query: 435 DVTLTCYEPEIVGLQVCQKTV 497
+ L E VG + + T+
Sbjct: 164 PLDLRMLEAGKVGFDILKSTI 184
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 58.8 bits (136), Expect = 3e-09
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Frame = +1
Query: 4 VKVHPVVLFQIVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 171
V VHP+VL IVD Y R D+ RV+G LLGTS +G V+VTN + VP +E
Sbjct: 17 VVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGSVDVTNSYAVPFEEDDKDPRIWF 76
Query: 172 AELNYAMDVYELNRRVNS 225
+ NY ++ + +R+N+
Sbjct: 77 LDHNYHESMFSMFKRINA 94
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +1
Query: 76 VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVNSSESIVGWWA 252
V G LLG V+EVTNCF P +E ++ +A+ NY +++ R VN + VGW+
Sbjct: 57 VTGQLLGLDVGSVLEVTNCFPFPMREDDEEADADGANYQLEMMRCLREVNVDNNTVGWYQ 116
Query: 253 TAM 261
+ +
Sbjct: 117 SCL 119
>01_06_1086 -
34421837-34422311,34422426-34422612,34423162-34423291,
34423485-34423720,34423804-34423961,34424048-34424128,
34424216-34424281,34424364-34424432,34424722-34424866,
34425645-34426138,34426244-34426811,34429529-34429574
Length = 884
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 220 NSSESIVGWWATAMK*PTTPLLYTSIIPVNAVSXSMLLWTL 342
N SES A K T LL I+PV A++ + LW L
Sbjct: 499 NISESYCAMQADKAKKNTATLLIAVIVPVVAITLMLFLWML 539
>11_01_0433 - 3323372-3324616,3324708-3324905
Length = 480
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 219 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 124
D++V L+ IH+ I F F ++FVW +A+G
Sbjct: 321 DAAVVLMLIHQFITFGFACTPLYFVWE-KAIG 351
>05_05_0039 -
21782093-21782320,21782383-21782754,21783031-21783496,
21784896-21784993,21785179-21785362,21785462-21785574,
21785942-21786127,21786191-21786364
Length = 606
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 219 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 124
D++V L+ IH+ I F F ++FVW +A+G
Sbjct: 311 DAAVILMLIHQFITFGFACTPLYFVWE-KAIG 341
>01_05_0320 -
20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 95 ARATKEWWK*PTASACHTKN-MPIKSK 172
A +KEWW +ACH N +P+K K
Sbjct: 508 AGLSKEWWGEAVLTACHVLNKIPMKHK 534
>08_01_0090 -
649631-651162,653189-655019,655313-655365,655731-655735,
656209-656411,656837-657292,657718-657805,657917-658017,
658404-658631,659128-659445,659528-659812,660148-660711
Length = 1887
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 264 VTNHSSVIHEYYSRECREXVHVTLDTSLAGGRMG 365
V+ +SS HE++ E E V V+ +S AG R+G
Sbjct: 34 VSYNSSKRHEHFEEEDEEGVVVSATSSSAGHRVG 67
>07_01_0780 +
6047375-6047494,6047603-6047713,6047804-6047926,
6048035-6048168,6048273-6049551
Length = 588
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 283 LYTSIIPVNAVSXSMLLWTLR 345
+Y +I P+ ++ MLLWTLR
Sbjct: 13 VYVAISPIQSLCPPMLLWTLR 33
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,878,967
Number of Sequences: 37544
Number of extensions: 370530
Number of successful extensions: 915
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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