Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30659.Seq
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 3e-08
SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.033
SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6) 29 2.9
SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_4183| Best HMM Match : APH_6_hur (HMM E-Value=7.4) 28 5.0
SB_40832| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41) 28 6.6
>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 55.6 bits (128), Expect = 3e-08
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Frame = +1
Query: 1 SVKVHPVVLFQIVDAYERRN--ADSHRVIGTLLGTSDKGVVEVTNCFCVPHKE-HADQVE 171
+V VHP+VL +VD + R RV+G LLG+ KGV++V NCF VP E DQ
Sbjct: 10 TVVVHPIVLLSVVDHFNRMGKVGSQKRVVGVLLGSRRKGVLDVANCFAVPFDEDDRDQNV 69
Query: 172 --AELNYAMDVYELNRRVN 222
+ +Y ++Y + ++VN
Sbjct: 70 WFLDHDYLENMYAMFKKVN 88
>SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 425
Score = 48.8 bits (111), Expect = 3e-06
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +1
Query: 4 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVP-HKEHADQVEAEL 180
V+V + + +I+ E + V G LLG +E+TNCF P +K D+ + ++
Sbjct: 18 VQVDGLTVLKIIKHCEEEGSSGDLVQGVLLGLIQDNRLEITNCFPFPSNKAGDDEDDDDV 77
Query: 181 NYAMDVYELNRRVNSSESIVGWW 249
NY M+V R VN VGW+
Sbjct: 78 NYQMEVMRRLRAVNIDHLHVGWY 100
>SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 35.5 bits (78), Expect = 0.033
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 381 CVPLGVPNGKQGCMFTPVDVTLTCYEPEIVGLQVCQKTVS 500
CV +GVP +G MF+ + + PE VG+ V Q+T S
Sbjct: 27 CVKMGVPGKTEGTMFSQIPCEVKLTGPEKVGVDVLQRTKS 66
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 166 VEAELNYAMDVYELNRRVNSSESIVG 243
V EL YA +YEL+++ N +E IVG
Sbjct: 1 VAVELEYAKSMYELSQKANPNEQIVG 26
>SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6)
Length = 219
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = -1
Query: 235 YFQRN*LFCSARKHPSRN*VPLRLDRHVLCVARRSSWLLPPLLCRSCPIRCR*LCENLHF 56
Y+ + CS + PSR +P R R + +R+ W++ +CR P R L ++F
Sbjct: 36 YYNYRHVRCSRSREPSR--IPKRFLRRIHNKSRKLRWVVYHRICRKIP-RSSNLHNYINF 92
Query: 55 DVRMRPQFEIK 23
R F+ K
Sbjct: 93 GRLRRRYFDSK 103
>SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = -1
Query: 235 YFQRN*LFCSARKHPSRN*VPLRLDRHVLCVARRSSWLLPPLLCRSCPIRCR*LCENLHF 56
Y+ + CS + PSR +P R R + +R+ W++ +CR+ P R L ++F
Sbjct: 90 YYNYRHVRCSRSREPSR--IPKRFLRRLHNKSRKLRWVVYHRICRNIP-RSSNLHNYINF 146
Query: 55 D-VRMRP 38
+R RP
Sbjct: 147 GRLRRRP 153
>SB_4183| Best HMM Match : APH_6_hur (HMM E-Value=7.4)
Length = 270
Score = 28.3 bits (60), Expect = 5.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 329 YSGHFAGWRSNGFTCICL 382
++GH W SNG TC+ L
Sbjct: 201 FNGHTYSWHSNGVTCVLL 218
>SB_40832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1496
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 467 CRSTSVPEDCVWWXRGSSGVAGXSD 541
C +T P+ V W RGS ++G +D
Sbjct: 427 CNATGHPQPVVTWRRGSQPISGLAD 451
>SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 320 CPCYSGHFAGWRSNGFTCIC 379
CPC +G + +GFTCIC
Sbjct: 130 CPCKNGGHCVNKVDGFTCIC 149
>SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 320 CPCYSGHFAGWRSNGFTCIC 379
CPC +G + +GFTCIC
Sbjct: 130 CPCKNGGHCVNKVDGFTCIC 149
>SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +1
Query: 292 SIIPVNAVSXSMLLWTLRWLEVE 360
++I V+ V S+L+W + WL+V+
Sbjct: 181 TLIAVHPVDGSLLVWLIEWLDVQ 203
>SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)
Length = 419
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 3 CEGPSCCFISNCGRIRTSKCRF 68
C G + CFI R R KCRF
Sbjct: 78 CRGSNDCFIDKVHRNRCQKCRF 99
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,281,227
Number of Sequences: 59808
Number of extensions: 434688
Number of successful extensions: 1542
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1540
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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