Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30657.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...    99   3e-22
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...    99   3e-22
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    27   1.6  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    26   2.7  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 99.1 bits (236), Expect = 3e-22
 Identities = 45/62 (72%), Positives = 54/62 (87%)
 Frame = +2

Query: 251 QKAISKALIAFYQKYVDEASKXEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKS 430
           ++AISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR EPKKFGG GARAR QKS
Sbjct: 79  RQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKS 138

Query: 431 YR 436
           YR
Sbjct: 139 YR 140



 Score = 64.5 bits (150), Expect = 8e-12
 Identities = 28/52 (53%), Positives = 39/52 (75%)
 Frame = +3

Query: 114 LDLVEPRLLQYKLQEPILLLGKEKFSMVDIRXTVKGGGHVAQVYAIRKLFQR 269
           L LV+P +L+ K+ EPIL+ G +KF+ VDIR  V GGGHV+Q+YAIR+   +
Sbjct: 33  LSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAISK 84



 Score = 32.7 bits (71), Expect = 0.032
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = +1

Query: 16 IQAVQVFGRKKTATAVAYXKRGHGML 93
          +Q+VQ FG+K  ATAVA+ K G G++
Sbjct: 1  MQSVQCFGKKGNATAVAHCKVGKGLI 26


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score = 99.1 bits (236), Expect = 3e-22
 Identities = 45/62 (72%), Positives = 54/62 (87%)
 Frame = +2

Query: 251 QKAISKALIAFYQKYVDEASKXEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKS 430
           ++AISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR EPKKFGG GARAR QKS
Sbjct: 79  RQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKS 138

Query: 431 YR 436
           YR
Sbjct: 139 YR 140



 Score = 64.5 bits (150), Expect = 8e-12
 Identities = 28/52 (53%), Positives = 39/52 (75%)
 Frame = +3

Query: 114 LDLVEPRLLQYKLQEPILLLGKEKFSMVDIRXTVKGGGHVAQVYAIRKLFQR 269
           L LV+P +L+ K+ EPIL+ G +KF+ VDIR  V GGGHV+Q+YAIR+   +
Sbjct: 33  LSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAISK 84



 Score = 32.7 bits (71), Expect = 0.032
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = +1

Query: 16 IQAVQVFGRKKTATAVAYXKRGHGML 93
          +Q+VQ FG+K  ATAVA+ K G G++
Sbjct: 1  MQSVQCFGKKGNATAVAHCKVGKGLI 26


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 220 VVVM*HKFTLSESYFKGSDRLLPEICR 300
           V+V   KF   ++Y KG+  ++P IC+
Sbjct: 766 VIVKHGKFKKMDAYVKGAPEIMPSICK 792


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 257 LSDSVNLCYMTTTLDCXSDVNH-REFFLAEQ 168
           LS+  N CYM + L C +     R+FF +++
Sbjct: 313 LSNLGNTCYMNSALQCLTHTRELRDFFTSDE 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,900,286
Number of Sequences: 5004
Number of extensions: 33094
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)