Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30657.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0152 - 1168928-1169377                                          111   3e-25
11_01_0155 - 1287003-1287452                                          111   3e-25
11_06_0598 - 25391923-25393197                                         29   2.7  
06_01_0095 - 785876-786376                                             27   8.4  

>12_01_0152 - 1168928-1169377
          Length = 149

 Score =  111 bits (267), Expect = 3e-25
 Identities = 49/62 (79%), Positives = 58/62 (93%)
 Frame = +2

Query: 251 QKAISKALIAFYQKYVDEASKXEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKS 430
           ++AI+KAL+A+YQKYVDEASK E+KDI  +YDR+LLVADPRRCEPKKFGG GARAR+QKS
Sbjct: 88  RQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKS 147

Query: 431 YR 436
           YR
Sbjct: 148 YR 149



 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 22/48 (45%), Positives = 35/48 (72%)
 Frame = +3

Query: 114 LDLVEPRLLQYKLQEPILLLGKEKFSMVDIRXTVKGGGHVAQVYAIRK 257
           ++L+ P +L+ K  EPILL G+ +F  +D+R  V+GGG  +Q+YAIR+
Sbjct: 42  IELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQ 89



 Score = 35.5 bits (78), Expect = 0.024
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = +1

Query: 25 VQVFGRKKTATAVAYXKRGHGML 93
          VQ FGRKKTA AV+Y K G G++
Sbjct: 13 VQCFGRKKTAVAVSYCKPGRGLI 35


>11_01_0155 - 1287003-1287452
          Length = 149

 Score =  111 bits (267), Expect = 3e-25
 Identities = 49/62 (79%), Positives = 58/62 (93%)
 Frame = +2

Query: 251 QKAISKALIAFYQKYVDEASKXEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKS 430
           ++AI+KAL+A+YQKYVDEASK E+KDI  +YDR+LLVADPRRCEPKKFGG GARAR+QKS
Sbjct: 88  RQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKS 147

Query: 431 YR 436
           YR
Sbjct: 148 YR 149



 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 22/48 (45%), Positives = 35/48 (72%)
 Frame = +3

Query: 114 LDLVEPRLLQYKLQEPILLLGKEKFSMVDIRXTVKGGGHVAQVYAIRK 257
           ++L+ P +L+ K  EPILL G+ +F  +D+R  V+GGG  +Q+YAIR+
Sbjct: 42  IELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQ 89



 Score = 35.5 bits (78), Expect = 0.024
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = +1

Query: 25 VQVFGRKKTATAVAYXKRGHGML 93
          VQ FGRKKTA AV+Y K G G++
Sbjct: 13 VQCFGRKKTAVAVSYCKPGRGLI 35


>11_06_0598 - 25391923-25393197
          Length = 424

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -2

Query: 417 LARAPGPPNFLGSQRRGSATSKLLSYCTRMSLISXFEASSTYFW*KAIRAF 265
           LA    PP  L S      TS L  + T +  ++    S+TY    AIR F
Sbjct: 254 LATLVSPPKLLQSLNISGITSGLPDWITELDQLTKITLSNTYLGEDAIRVF 304


>06_01_0095 - 785876-786376
          Length = 166

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = -2

Query: 369 GSATSKLLSYCTRMSLISXFEASSTYFW*KAIRAFEIAF 253
           GSA +K++ YCT+ ++ +   +SS+    + ++ F++ F
Sbjct: 59  GSALAKVIEYCTKHAIAAAEGSSSSRKAKEELKKFDVEF 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,629,056
Number of Sequences: 37544
Number of extensions: 254145
Number of successful extensions: 630
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)