Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30657.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)             111   2e-25
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)                        31   0.70 
SB_55909| Best HMM Match : Sushi (HMM E-Value=2.3e-31)                 29   2.1  
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)                   28   4.9  
SB_45111| Best HMM Match : rve (HMM E-Value=1.2e-24)                   27   6.5  
SB_51918| Best HMM Match : DUF1610 (HMM E-Value=0.74)                  27   6.5  
SB_21212| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_15652| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score =  111 bits (268), Expect = 2e-25
 Identities = 51/62 (82%), Positives = 58/62 (93%)
 Frame = +2

Query: 251 QKAISKALIAFYQKYVDEASKXEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKS 430
           ++AISK+L+A+YQKYVDE SK EI+DILVQYDRSLLVADPRR E KKFGGPGAR+RYQKS
Sbjct: 46  RQAISKSLVAYYQKYVDEVSKKEIRDILVQYDRSLLVADPRRTEAKKFGGPGARSRYQKS 105

Query: 431 YR 436
           YR
Sbjct: 106 YR 107



 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 25/41 (60%), Positives = 33/41 (80%)
 Frame = +3

Query: 147 KLQEPILLLGKEKFSMVDIRXTVKGGGHVAQVYAIRKLFQR 269
           K++EPILLLGKE+F  VDIR  VKGGGH +++YAIR+   +
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAIRQAISK 51


>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
          Length = 119

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 272 LIAFYQKYVDEASKXEIKDILVQYDRSLLVADPRRCE 382
           ++AF QKY+D   + E     +Q+ + +LV+  R CE
Sbjct: 53  VLAFRQKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89


>SB_55909| Best HMM Match : Sushi (HMM E-Value=2.3e-31)
          Length = 526

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = +1

Query: 28  QVFGRKKTATA-VAYXKRGHGMLTCKRRAHWTWLSPDCCSTNFRNLSFCSA 177
           Q +G K + T    Y ++G    TC+    WT     CCS +      C A
Sbjct: 418 QYYGEKCSYTCDQGYDRKGSAERTCQLDGTWTGQPTSCCSQSNLAAKLCPA 468


>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
          Length = 943

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
 Frame = -3

Query: 254 SDSVNLCYMTTTLDCXSDVNHR-----EFFLAEQKDRFL 153
           S++  LCY+ T ++C  D+ H+     E  LA++K + L
Sbjct: 582 SEAEKLCYIETRVECLMDMGHKCSTSTELSLADRKAKVL 620


>SB_45111| Best HMM Match : rve (HMM E-Value=1.2e-24)
          Length = 1575

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = +1

Query: 94  TCKRRAHWTWLSPDCCSTNFRNLSFCSARKNSLWLTSXXQSRVVVM*HKFTLSESYF 264
           TCK    W+    +C +   R  SF S R    WL     +    + H F   +SYF
Sbjct: 491 TCKE---WSMDRLECTTCGVRRHSFTSIRAFCDWLFGGSNAGYTCLAHNFKGYDSYF 544


>SB_51918| Best HMM Match : DUF1610 (HMM E-Value=0.74)
          Length = 378

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = +1

Query: 94  TCKRRAHWTWLSPDCCSTNFRNLSFCSARKNSLWLTSXXQSRVVVM*HKFTLSESYF 264
           TCK    W     +C +   R  SF S+R    WL     +    + H F   +SYF
Sbjct: 289 TCKE---WPMDRLECTTCGVRKHSFTSSRAFCDWLFGGSNAGYTCLAHNFKGYDSYF 342


>SB_21212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 139 CSTNFRNLSFCSARKNSLWLTSXXQSRVVVM*HKFTLSESYF 264
           CS NF+    C+   NSL+  S  + R      +  L E+YF
Sbjct: 56  CSMNFKK-DVCAIGSNSLYRKSHRRKRTTFTHDQLQLMEAYF 96


>SB_15652| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 689

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 25  VQVFG-RKKTATAVAYXKRGHGMLTCKRRAHWTWLSPDCCSTNFRNLSFCSARKNSL 192
           V++F  +K+T     + KRG G    ++    +   PDCC   +  ++  SAR+ +L
Sbjct: 222 VEIFDIQKRTCLHPDWSKRGIGYFLLQQHCSCSSGMPDCCPGGW-GITLASARRATL 277


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,008,365
Number of Sequences: 59808
Number of extensions: 271950
Number of successful extensions: 560
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)