Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30657.Seq
(499 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein. 118 1e-26
BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16 p... 118 1e-26
BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16 p... 118 1e-26
AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16 p... 118 1e-26
BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein. 76 8e-14
AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens ... 52 1e-06
BC064361-1|AAH64361.1| 1056|Homo sapiens pleckstrin homology dom... 37 0.045
AK074103-1|BAB84929.1| 628|Homo sapiens FLJ00174 protein protein. 37 0.045
AJ002220-1|CAB91652.1| 926|Homo sapiens protein ( Homo sapiens ... 37 0.045
AB002354-1|BAA20813.2| 1058|Homo sapiens KIAA0356 protein protein. 37 0.045
>M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein.
Length = 146
Score = 118 bits (284), Expect = 1e-26
Identities = 53/62 (85%), Positives = 60/62 (96%)
Frame = +2
Query: 251 QKAISKALIAFYQKYVDEASKXEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKS 430
+++ISKAL+A+YQKYVDEASK EIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQKS
Sbjct: 85 RQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKS 144
Query: 431 YR 436
YR
Sbjct: 145 YR 146
Score = 81.4 bits (192), Expect = 2e-15
Identities = 36/50 (72%), Positives = 44/50 (88%)
Frame = +3
Query: 108 RXLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRXTVKGGGHVAQVYAIRK 257
R L+++EPR LQYKL EP+LLLGKE+F+ VDIR VKGGGHVAQ+YAIR+
Sbjct: 37 RPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQ 86
Score = 45.6 bits (103), Expect = 1e-04
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = +1
Query: 16 IQAVQVFGRKKTATAVAYXKRGHGMLTCKRR 108
+Q+VQVFGRKKTATAVA+ KRG+G++ R
Sbjct: 7 LQSVQVFGRKKTATAVAHCKRGNGLIKVNGR 37
>BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 118 bits (284), Expect = 1e-26
Identities = 53/62 (85%), Positives = 60/62 (96%)
Frame = +2
Query: 251 QKAISKALIAFYQKYVDEASKXEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKS 430
+++ISKAL+A+YQKYVDEASK EIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQKS
Sbjct: 85 RQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKS 144
Query: 431 YR 436
YR
Sbjct: 145 YR 146
Score = 81.4 bits (192), Expect = 2e-15
Identities = 36/50 (72%), Positives = 44/50 (88%)
Frame = +3
Query: 108 RXLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRXTVKGGGHVAQVYAIRK 257
R L+++EPR LQYKL EP+LLLGKE+F+ VDIR VKGGGHVAQ+YAIR+
Sbjct: 37 RPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQ 86
Score = 45.6 bits (103), Expect = 1e-04
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = +1
Query: 16 IQAVQVFGRKKTATAVAYXKRGHGMLTCKRR 108
+Q+VQVFGRKKTATAVA+ KRG+G++ R
Sbjct: 7 LQSVQVFGRKKTATAVAHCKRGNGLIKVNGR 37
>BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 118 bits (284), Expect = 1e-26
Identities = 53/62 (85%), Positives = 60/62 (96%)
Frame = +2
Query: 251 QKAISKALIAFYQKYVDEASKXEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKS 430
+++ISKAL+A+YQKYVDEASK EIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQKS
Sbjct: 85 RQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKS 144
Query: 431 YR 436
YR
Sbjct: 145 YR 146
Score = 81.4 bits (192), Expect = 2e-15
Identities = 36/50 (72%), Positives = 44/50 (88%)
Frame = +3
Query: 108 RXLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRXTVKGGGHVAQVYAIRK 257
R L+++EPR LQYKL EP+LLLGKE+F+ VDIR VKGGGHVAQ+YAIR+
Sbjct: 37 RPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQ 86
Score = 45.6 bits (103), Expect = 1e-04
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = +1
Query: 16 IQAVQVFGRKKTATAVAYXKRGHGMLTCKRR 108
+Q+VQVFGRKKTATAVA+ KRG+G++ R
Sbjct: 7 LQSVQVFGRKKTATAVAHCKRGNGLIKVNGR 37
>AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 118 bits (284), Expect = 1e-26
Identities = 53/62 (85%), Positives = 60/62 (96%)
Frame = +2
Query: 251 QKAISKALIAFYQKYVDEASKXEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKS 430
+++ISKAL+A+YQKYVDEASK EIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQKS
Sbjct: 85 RQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKS 144
Query: 431 YR 436
YR
Sbjct: 145 YR 146
Score = 81.4 bits (192), Expect = 2e-15
Identities = 36/50 (72%), Positives = 44/50 (88%)
Frame = +3
Query: 108 RXLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRXTVKGGGHVAQVYAIRK 257
R L+++EPR LQYKL EP+LLLGKE+F+ VDIR VKGGGHVAQ+YAIR+
Sbjct: 37 RPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQ 86
Score = 45.6 bits (103), Expect = 1e-04
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = +1
Query: 16 IQAVQVFGRKKTATAVAYXKRGHGMLTCKRR 108
+Q+VQVFGRKKTATAVA+ KRG+G++ R
Sbjct: 7 LQSVQVFGRKKTATAVAHCKRGNGLIKVNGR 37
>BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein.
Length = 152
Score = 75.8 bits (178), Expect = 8e-14
Identities = 33/46 (71%), Positives = 40/46 (86%)
Frame = +3
Query: 108 RXLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRXTVKGGGHVAQVY 245
R L+++EPR LQYKL EP+LLLGKE+F+ VDIR VKGGGHVAQ+Y
Sbjct: 37 RPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIY 82
Score = 45.6 bits (103), Expect = 1e-04
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = +1
Query: 16 IQAVQVFGRKKTATAVAYXKRGHGMLTCKRR 108
+Q+VQVFGRKKTATAVA+ KRG+G++ R
Sbjct: 7 LQSVQVFGRKKTATAVAHCKRGNGLIKVNGR 37
>AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ40618 fis, clone THYMU2013089, moderately
similar to 40S RIBOSOMAL PROTEIN S16. ).
Length = 178
Score = 52.0 bits (119), Expect = 1e-06
Identities = 34/110 (30%), Positives = 46/110 (41%)
Frame = +3
Query: 114 LDLVEPRLLQYKLQEPILLLGKEKFSMVDIRXTVKGGGHVAQVYAIRKLFQRL*SPSTRN 293
L+++ LQYKL E LLL KE+ + +DI VKG GHV Q+YA+ + + P
Sbjct: 50 LEMIRLLTLQYKLLELGLLLDKEQLAGMDIHVRVKGSGHVVQIYAVLQYISKALVPCYPK 109
Query: 294 M*TKPQRXKSKTS*YNTIGVCWWLTXXXXXXXXXXXXXXXXDTRNLTVKP 443
+ T CWW T TRN + KP
Sbjct: 110 YVDEASEEIKDT----LTRPCWWFTPVAMNPRNLQALVPVLTTRNHSSKP 155
>BC064361-1|AAH64361.1| 1056|Homo sapiens pleckstrin homology domain
containing, family M (with RUN domain) member 1 protein.
Length = 1056
Score = 36.7 bits (81), Expect = 0.045
Identities = 23/56 (41%), Positives = 29/56 (51%)
Frame = -3
Query: 302 RLHISGRRRSEPLK*LSDSVNLCYMTTTLDCXSDVNHREFFLAEQKDRFLKFVLQQ 135
R+H+ GRRR E LK L D + LC + +NHR + L E RF LQQ
Sbjct: 914 RMHLIGRRR-EQLKLLGDYLGLCRSGALKELSKRLNHRNYLL-ESPHRFSVADLQQ 967
>AK074103-1|BAB84929.1| 628|Homo sapiens FLJ00174 protein protein.
Length = 628
Score = 36.7 bits (81), Expect = 0.045
Identities = 23/56 (41%), Positives = 29/56 (51%)
Frame = -3
Query: 302 RLHISGRRRSEPLK*LSDSVNLCYMTTTLDCXSDVNHREFFLAEQKDRFLKFVLQQ 135
R+H+ GRRR E LK L D + LC + +NHR + L E RF LQQ
Sbjct: 486 RMHLIGRRR-EQLKLLGDYLGLCRSGALKELSKRLNHRNYLL-ESPHRFSVADLQQ 539
>AJ002220-1|CAB91652.1| 926|Homo sapiens protein ( Homo sapiens B2
gene partial cDNA, clone B2E. ).
Length = 926
Score = 36.7 bits (81), Expect = 0.045
Identities = 23/56 (41%), Positives = 29/56 (51%)
Frame = -3
Query: 302 RLHISGRRRSEPLK*LSDSVNLCYMTTTLDCXSDVNHREFFLAEQKDRFLKFVLQQ 135
R+H+ GRRR E LK L D + LC + +NHR + L E RF LQQ
Sbjct: 784 RMHLIGRRR-EQLKLLGDYLGLCRSGALKELSKRLNHRNYLL-ESPHRFSVADLQQ 837
>AB002354-1|BAA20813.2| 1058|Homo sapiens KIAA0356 protein protein.
Length = 1058
Score = 36.7 bits (81), Expect = 0.045
Identities = 23/56 (41%), Positives = 29/56 (51%)
Frame = -3
Query: 302 RLHISGRRRSEPLK*LSDSVNLCYMTTTLDCXSDVNHREFFLAEQKDRFLKFVLQQ 135
R+H+ GRRR E LK L D + LC + +NHR + L E RF LQQ
Sbjct: 916 RMHLIGRRR-EQLKLLGDYLGLCRSGALKELSKRLNHRNYLL-ESPHRFSVADLQQ 969
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,688,285
Number of Sequences: 237096
Number of extensions: 1322152
Number of successful extensions: 2806
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2805
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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