Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30657.Seq
         (499 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070671-1|AAL48142.1|  148|Drosophila melanogaster RH07540p pro...   122   2e-28
AE013599-3413|AAF46862.1|  148|Drosophila melanogaster CG4046-PA...   122   2e-28
AY089671-1|AAL90409.1|  395|Drosophila melanogaster RH44312p pro...    29   3.5  
AE014297-663|AAF54157.3|  395|Drosophila melanogaster CG2957-PA ...    29   3.5  

>AY070671-1|AAL48142.1|  148|Drosophila melanogaster RH07540p
           protein.
          Length = 148

 Score =  122 bits (295), Expect = 2e-28
 Identities = 56/62 (90%), Positives = 60/62 (96%)
 Frame = +2

Query: 251 QKAISKALIAFYQKYVDEASKXEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKS 430
           ++AISKAL+AFYQKYVDEASK EIKDILVQYDR+LLV DPRRCEPKKFGGPGARARYQKS
Sbjct: 87  RQAISKALVAFYQKYVDEASKKEIKDILVQYDRTLLVGDPRRCEPKKFGGPGARARYQKS 146

Query: 431 YR 436
           YR
Sbjct: 147 YR 148



 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 36/54 (66%), Positives = 45/54 (83%)
 Frame = +3

Query: 108 RXLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRXTVKGGGHVAQVYAIRKLFQR 269
           R L+ +EP++LQYKLQEP+LLLGKEKF+ VDIR  V GGGHVAQ+YAIR+   +
Sbjct: 39  RPLEQIEPKVLQYKLQEPLLLLGKEKFAGVDIRVRVSGGGHVAQIYAIRQAISK 92



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 25/35 (71%), Positives = 28/35 (80%)
 Frame = +1

Query: 4   RRXXIQAVQVFGRKKTATAVAYXKRGHGMLTCKRR 108
           RR  +QAVQVFGRKKTATAVAY KRG+G+L    R
Sbjct: 5   RREPVQAVQVFGRKKTATAVAYCKRGNGLLKVNGR 39


>AE013599-3413|AAF46862.1|  148|Drosophila melanogaster CG4046-PA
           protein.
          Length = 148

 Score =  122 bits (295), Expect = 2e-28
 Identities = 56/62 (90%), Positives = 60/62 (96%)
 Frame = +2

Query: 251 QKAISKALIAFYQKYVDEASKXEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKS 430
           ++AISKAL+AFYQKYVDEASK EIKDILVQYDR+LLV DPRRCEPKKFGGPGARARYQKS
Sbjct: 87  RQAISKALVAFYQKYVDEASKKEIKDILVQYDRTLLVGDPRRCEPKKFGGPGARARYQKS 146

Query: 431 YR 436
           YR
Sbjct: 147 YR 148



 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 36/54 (66%), Positives = 45/54 (83%)
 Frame = +3

Query: 108 RXLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRXTVKGGGHVAQVYAIRKLFQR 269
           R L+ +EP++LQYKLQEP+LLLGKEKF+ VDIR  V GGGHVAQ+YAIR+   +
Sbjct: 39  RPLEQIEPKVLQYKLQEPLLLLGKEKFAGVDIRVRVSGGGHVAQIYAIRQAISK 92



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 25/35 (71%), Positives = 28/35 (80%)
 Frame = +1

Query: 4   RRXXIQAVQVFGRKKTATAVAYXKRGHGMLTCKRR 108
           RR  +QAVQVFGRKKTATAVAY KRG+G+L    R
Sbjct: 5   RREPVQAVQVFGRKKTATAVAYCKRGNGLLKVNGR 39


>AY089671-1|AAL90409.1|  395|Drosophila melanogaster RH44312p
           protein.
          Length = 395

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = +2

Query: 353 LLVADPRRCEPKKFGGPGARARY 421
           LL  D RR E KKFG  GAR +Y
Sbjct: 368 LLTRDYRRRERKKFGQEGARRKY 390


>AE014297-663|AAF54157.3|  395|Drosophila melanogaster CG2957-PA
           protein.
          Length = 395

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = +2

Query: 353 LLVADPRRCEPKKFGGPGARARY 421
           LL  D RR E KKFG  GAR +Y
Sbjct: 368 LLTRDYRRRERKKFGQEGARRKY 390


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,830,679
Number of Sequences: 53049
Number of extensions: 393086
Number of successful extensions: 1086
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1763278080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)