Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30657.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...   100   5e-22
AC006769-14|AAF60579.1|  378|Caenorhabditis elegans Hypothetical...    30   0.81 
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...    29   2.5  
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.        29   2.5  
L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical pr...    28   4.3  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score =  100 bits (240), Expect = 5e-22
 Identities = 45/62 (72%), Positives = 54/62 (87%)
 Frame = +2

Query: 251 QKAISKALIAFYQKYVDEASKXEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKS 430
           ++A++KAL+A+Y KYVDE SK E+K+I   YD+SLLVADPRR E KKFGGPGARARYQKS
Sbjct: 83  RQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRRRESKKFGGPGARARYQKS 142

Query: 431 YR 436
           YR
Sbjct: 143 YR 144



 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 31/50 (62%), Positives = 42/50 (84%)
 Frame = +3

Query: 108 RXLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRXTVKGGGHVAQVYAIRK 257
           R L+ +EP++L+ KLQEP+LL+GKE+F  VDIR  V GGGHVAQ+YA+R+
Sbjct: 35  RPLEFLEPQILRIKLQEPLLLVGKERFQDVDIRIRVSGGGHVAQIYAVRQ 84



 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 18/31 (58%), Positives = 24/31 (77%)
 Frame = +1

Query: 16  IQAVQVFGRKKTATAVAYXKRGHGMLTCKRR 108
           +Q+VQ FGRKKTATAVA+ K+G G++    R
Sbjct: 5   VQSVQTFGRKKTATAVAHCKKGQGLIKVNGR 35


>AC006769-14|AAF60579.1|  378|Caenorhabditis elegans Hypothetical
           protein Y45G12C.1 protein.
          Length = 378

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 97  CKRRAHWTWLSPDCCSTNFRNLSFCSARKNSLWLTSXXQSRVVVM*HKFTLSESY 261
           C+  + WT  S D C  N +N +    R N  WL++    ++V + H+ +L + Y
Sbjct: 68  CECISSWTGKSYDFCYRNPKNATLVGKRFNCTWLSTLEDLKLVGL-HEQSLVDLY 121


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
           protein 1 protein.
          Length = 974

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -3

Query: 227 TTTLDCXSDVNHREFFLAEQKD-RF--LKFVLQQSG 129
           TT LDC  +  H EF+ AE  D RF  + F+ +Q G
Sbjct: 146 TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 181


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -3

Query: 227 TTTLDCXSDVNHREFFLAEQKD-RF--LKFVLQQSG 129
           TT LDC  +  H EF+ AE  D RF  + F+ +Q G
Sbjct: 21  TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 56


>L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical
           protein F09G8.3 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 353 LLVADPRRCEPKKFGGPGARARY 421
           LL  DPR+ E  K   PGARA++
Sbjct: 365 LLTLDPRKNERSKVNQPGARAKW 387


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,802,389
Number of Sequences: 27780
Number of extensions: 191424
Number of successful extensions: 429
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)