Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30657.Seq
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C) 112 1e-25
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same... 112 1e-25
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi... 111 3e-25
At1g43570.1 68414.m05001 hypothetical protein 32 0.25
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 28 3.0
At5g63900.1 68418.m08023 PHD finger family protein contains Pfam... 27 5.3
At3g24255.1 68416.m03045 expressed protein 27 5.3
At5g48630.1 68418.m06014 cyclin family protein similar to SP|P55... 27 7.0
At4g11090.1 68417.m01801 expressed protein other hypothetical pr... 27 9.3
At3g55830.1 68416.m06203 glycosyltransferase family protein 47 s... 27 9.3
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con... 27 9.3
>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
Length = 146
Score = 112 bits (269), Expect = 1e-25
Identities = 50/62 (80%), Positives = 59/62 (95%)
Frame = +2
Query: 251 QKAISKALIAFYQKYVDEASKXEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKS 430
+++I+KAL+A+YQKYVDE SK EIKDILV+YDR+LLVADPRRCEPKKFGG GAR+RYQKS
Sbjct: 85 RQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKS 144
Query: 431 YR 436
YR
Sbjct: 145 YR 146
Score = 62.1 bits (144), Expect = 2e-10
Identities = 25/48 (52%), Positives = 39/48 (81%)
Frame = +3
Query: 114 LDLVEPRLLQYKLQEPILLLGKEKFSMVDIRXTVKGGGHVAQVYAIRK 257
++L +P +L++K+ EP+LLLGK +F+ V++R V GGGH +QVYAIR+
Sbjct: 39 IELFQPEILRFKIFEPVLLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQ 86
Score = 37.1 bits (82), Expect = 0.007
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +1
Query: 1 ARRXXIQAVQVFGRKKTATAVAYXKRGHGML 93
A + ++VQ FGRKKTA AV + KRG G++
Sbjct: 2 ATQPATESVQCFGRKKTAVAVTHCKRGSGLI 32
>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
GB:Q42340
Length = 146
Score = 112 bits (269), Expect = 1e-25
Identities = 50/62 (80%), Positives = 59/62 (95%)
Frame = +2
Query: 251 QKAISKALIAFYQKYVDEASKXEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKS 430
+++I+KAL+A+YQKYVDE SK EIKDILV+YDR+LLVADPRRCEPKKFGG GAR+RYQKS
Sbjct: 85 RQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKS 144
Query: 431 YR 436
YR
Sbjct: 145 YR 146
Score = 62.5 bits (145), Expect = 2e-10
Identities = 26/48 (54%), Positives = 39/48 (81%)
Frame = +3
Query: 114 LDLVEPRLLQYKLQEPILLLGKEKFSMVDIRXTVKGGGHVAQVYAIRK 257
++L +P +L++K+ EPILLLGK +F+ V++R V GGGH +QVYAIR+
Sbjct: 39 IELFQPEILRFKIFEPILLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQ 86
Score = 37.1 bits (82), Expect = 0.007
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +1
Query: 1 ARRXXIQAVQVFGRKKTATAVAYXKRGHGML 93
A + ++VQ FGRKKTA AV + KRG G++
Sbjct: 2 ATQPATESVQCFGRKKTAVAVTHCKRGSGLI 32
>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
thaliana]
Length = 146
Score = 111 bits (266), Expect = 3e-25
Identities = 49/62 (79%), Positives = 59/62 (95%)
Frame = +2
Query: 251 QKAISKALIAFYQKYVDEASKXEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKS 430
+++I+KAL+A+YQKYVDE SK EIKDIL++YDR+LLVADPRRCE KKFGGPGARAR+QKS
Sbjct: 85 RQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFGGPGARARFQKS 144
Query: 431 YR 436
YR
Sbjct: 145 YR 146
Score = 57.6 bits (133), Expect = 4e-09
Identities = 23/48 (47%), Positives = 38/48 (79%)
Frame = +3
Query: 114 LDLVEPRLLQYKLQEPILLLGKEKFSMVDIRXTVKGGGHVAQVYAIRK 257
++L +P +L++K+ EP+LLLGK +F+ VD+R GGG+ ++VYAIR+
Sbjct: 39 IELYQPEILRFKIFEPVLLLGKHRFAGVDMRIRATGGGNTSRVYAIRQ 86
Score = 41.9 bits (94), Expect = 2e-04
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = +1
Query: 19 QAVQVFGRKKTATAVAYXKRGHGML 93
++VQ FGRKKTATAV Y KRG GM+
Sbjct: 8 ESVQCFGRKKTATAVTYCKRGSGMI 32
>At1g43570.1 68414.m05001 hypothetical protein
Length = 348
Score = 31.9 bits (69), Expect = 0.25
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -2
Query: 378 QRRGSATSKLLSYCTRMSLISXFEASSTYFW*KAIR 271
+R S T + LSYC R+ LI S T FW A R
Sbjct: 19 KRISSWTGRFLSYCGRLQLIKSVLMSITNFWSSAFR 54
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 28.3 bits (60), Expect = 3.0
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 227 SCSTSLRYQKAISKALIAFYQKYVDEASKXEIKDILVQYDRSLL 358
SC R+Q + AL F+Q++ AS IL Y+R LL
Sbjct: 1563 SCEKFSRFQHKLQTALEQFHQRFSLSASYLRNMMILSAYNRGLL 1606
>At5g63900.1 68418.m08023 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 557
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 97 CKRRAHWTWLSPDCCSTNFRNLSFCSARKNSLW 195
C+RR H T L D C + R FCS++ N ++
Sbjct: 321 CQRRFHLTCLKEDSCIVSSRGW-FCSSQCNRVF 352
>At3g24255.1 68416.m03045 expressed protein
Length = 836
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 375 RRGSATSKLLSYCTRMSLISXFEASSTYFW*KAIR 271
R G T++ LS+ R+ LIS S T FW A R
Sbjct: 142 RIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFR 176
>At5g48630.1 68418.m06014 cyclin family protein similar to SP|P55168
Cyclin C {Gallus gallus}; contains Pfam profile PF00134:
Cyclin, N-terminal domain
Length = 253
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 251 QKAISKALIAFYQK--YVDEASKXEIKDIL 334
+ + L+ FY K Y DE + EIKDIL
Sbjct: 99 ESVVHAKLLVFYMKKLYADEKFRYEIKDIL 128
>At4g11090.1 68417.m01801 expressed protein other hypothetical
proteins - Arabidopsis thaliana
Length = 432
Score = 26.6 bits (56), Expect = 9.3
Identities = 9/28 (32%), Positives = 12/28 (42%)
Frame = +1
Query: 112 HWTWLSPDCCSTNFRNLSFCSARKNSLW 195
+W W DC F +L F +N W
Sbjct: 122 NWKWKPNDCSLPRFDSLRFLQLMRNKSW 149
>At3g55830.1 68416.m06203 glycosyltransferase family protein 47
similar to exostose-related protein 2, Homo sapiens,
PIR:JC5935 [SP|Q93063], EXTL2, Mus musculus
[GI:10443633]
Length = 334
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 218 GWWSCSTSLRYQKAISKALIAFYQKYV 298
GWWS S Y +SKA F++KY+
Sbjct: 214 GWWSVWWSGTYSMVLSKAAF-FHKKYL 239
>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
contains Pfam profile PF00380: ribosomal protein S9
Length = 430
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 198 DIRXTVKGGGHVAQVYAIR 254
DI+ TVKGGG QV AI+
Sbjct: 362 DIKCTVKGGGTTGQVGAIQ 380
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,331,163
Number of Sequences: 28952
Number of extensions: 184993
Number of successful extensions: 448
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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