Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30652.Seq
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   101   5e-23
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   101   5e-23
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    31   0.14 
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    26   3.9  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   6.8  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    25   9.0  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  101 bits (243), Expect = 5e-23
 Identities = 47/63 (74%), Positives = 54/63 (85%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQK 436
           IRQAISKA++A+YQK+ DE SK E+K  L+ YDR+LLVADPRR EPKKFGG GARAR QK
Sbjct: 78  IRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQK 137

Query: 437 SYR 445
           SYR
Sbjct: 138 SYR 140



 Score =  101 bits (241), Expect = 9e-23
 Identities = 44/76 (57%), Positives = 61/76 (80%)
 Frame = +3

Query: 27  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 206
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 207 EIRVTVKGGGHVAQVY 254
           +IRV V GGGHV+Q+Y
Sbjct: 61  DIRVRVSGGGHVSQIY 76


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  101 bits (243), Expect = 5e-23
 Identities = 47/63 (74%), Positives = 54/63 (85%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQK 436
           IRQAISKA++A+YQK+ DE SK E+K  L+ YDR+LLVADPRR EPKKFGG GARAR QK
Sbjct: 78  IRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQK 137

Query: 437 SYR 445
           SYR
Sbjct: 138 SYR 140



 Score =  101 bits (241), Expect = 9e-23
 Identities = 44/76 (57%), Positives = 61/76 (80%)
 Frame = +3

Query: 27  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 206
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 207 EIRVTVKGGGHVAQVY 254
           +IRV V GGGHV+Q+Y
Sbjct: 61  DIRVRVSGGGHVSQIY 76


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = +3

Query: 48  GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVEIRVTVK 227
           G++K++ A      G G   VNG P D+   R++  K      L    + +   +  TV 
Sbjct: 12  GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70

Query: 228 GGGHVAQ 248
           GGG   Q
Sbjct: 71  GGGPTGQ 77


>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 17/58 (29%), Positives = 22/58 (37%)
 Frame = +1

Query: 130 WLSPDCCSTNFRNLSFCSARKNSLWLKSE*QSRVVVM*HKFTYQTSYFKGSDRLLPEI 303
           W S D  S N    S  S  K S W + E +  +           S  K  +RLLP +
Sbjct: 342 WSSSDMASLNDSLYSHPSVSKQSTWTEEELKEELESFGELVPVPFSSTKAFERLLPHL 399


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 114  RLHAAFHDHACNTQLRWRFS 55
            RLH+ F++H C + L+  FS
Sbjct: 1062 RLHSLFNEHFCKSNLQLFFS 1081


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 426 DTRNLTVKPSRKPSGGIVAASCCH 497
           D  N+ VKP+  P+  +    CCH
Sbjct: 566 DRFNVIVKPALNPAERMTVRICCH 589


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,254,563
Number of Sequences: 5004
Number of extensions: 44083
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)