Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30652.Seq
         (518 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)             117   7e-27
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)                        33   0.19 
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.0  
SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_56313| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-14)               27   9.3  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score =  117 bits (281), Expect = 7e-27
 Identities = 54/63 (85%), Positives = 59/63 (93%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQK 436
           IRQAISK+L+A+YQKY DE SKKEI+DILVQYDRSLLVADPRR E KKFGGPGAR+RYQK
Sbjct: 45  IRQAISKSLVAYYQKYVDEVSKKEIRDILVQYDRSLLVADPRRTEAKKFGGPGARSRYQK 104

Query: 437 SYR 445
           SYR
Sbjct: 105 SYR 107



 Score = 53.2 bits (122), Expect(2) = 7e-08
 Identities = 22/33 (66%), Positives = 29/33 (87%)
 Frame = +3

Query: 156 KLQEPILLLGKEKFSMVEIRVTVKGGGHVAQVY 254
           K++EPILLLGKE+F  V+IRV VKGGGH +++Y
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIY 43



 Score = 20.6 bits (41), Expect(2) = 7e-08
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +3

Query: 30 QAVQVFGRK 56
          Q+VQVFGRK
Sbjct: 3  QSVQVFGRK 11


>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
          Length = 119

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 233 WSCSTSLPIRQAIS-KALIAFYQKYXDEASKKEIKDILVQYDRSLLVADPRRCE 391
           W  +  L ++       ++AF QKY D   +KE     +Q+ + +LV+  R CE
Sbjct: 36  WDRALELAVKHKTHVDTVLAFRQKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89


>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 200 REFFLAEQKDRFLKFVLQQSGLNQ--VQWAP 114
           R F   + KDR+LK  L++ G  Q   QW P
Sbjct: 12  RSFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42


>SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 92  SWNAACKRAPIGLG*AQTAAVQTSGTYPFARQGKILYG 205
           SW  A K+ P G G  ++     +G Y   R G+  YG
Sbjct: 19  SWQNAEKKKPAGFGRGRSKRGYVNGNYEARRPGERSYG 56


>SB_56313| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-14)
          Length = 910

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -1

Query: 251 NLCYMTTTLDCHSDFNHREFFLAEQKDRFL 162
           +LCY   T D + DF   E F     D FL
Sbjct: 754 SLCYSVKTTDIYRDFQEDEDFSEYSTDHFL 783


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,961,330
Number of Sequences: 59808
Number of extensions: 370205
Number of successful extensions: 977
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)