Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30652.Seq
         (518 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)           117   4e-27
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same...   117   4e-27
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...   116   7e-27
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con...    35   0.038
At1g43570.1 68414.m05001 hypothetical protein                          29   1.9  
At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containi...    27   7.6  

>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
          Length = 146

 Score =  117 bits (282), Expect = 4e-27
 Identities = 53/63 (84%), Positives = 60/63 (95%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQK 436
           IRQ+I+KAL+A+YQKY DE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GAR+RYQK
Sbjct: 84  IRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQK 143

Query: 437 SYR 445
           SYR
Sbjct: 144 SYR 146



 Score =  102 bits (244), Expect = 2e-22
 Identities = 42/81 (51%), Positives = 63/81 (77%)
 Frame = +3

Query: 12  ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 191
           A +   ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EP+LLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKH 61

Query: 192 KFSMVEIRVTVKGGGHVAQVY 254
           +F+ V +R+ V GGGH +QVY
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVY 82


>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
           GB:Q42340
          Length = 146

 Score =  117 bits (282), Expect = 4e-27
 Identities = 53/63 (84%), Positives = 60/63 (95%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQK 436
           IRQ+I+KAL+A+YQKY DE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GAR+RYQK
Sbjct: 84  IRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQK 143

Query: 437 SYR 445
           SYR
Sbjct: 144 SYR 146



 Score =  102 bits (245), Expect = 1e-22
 Identities = 43/81 (53%), Positives = 63/81 (77%)
 Frame = +3

Query: 12  ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 191
           A +   ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EPILLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKH 61

Query: 192 KFSMVEIRVTVKGGGHVAQVY 254
           +F+ V +R+ V GGGH +QVY
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVY 82


>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
           to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
           thaliana]
          Length = 146

 Score =  116 bits (280), Expect = 7e-27
 Identities = 54/73 (73%), Positives = 63/73 (86%)
 Frame = +2

Query: 227 GWWSCSTSLPIRQAISKALIAFYQKYXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFG 406
           G  + S    IRQ+I+KAL+A+YQKY DE SKKEIKDIL++YDR+LLVADPRRCE KKFG
Sbjct: 74  GGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFG 133

Query: 407 GPGARARYQKSYR 445
           GPGARAR+QKSYR
Sbjct: 134 GPGARARFQKSYR 146



 Score =  102 bits (244), Expect = 2e-22
 Identities = 41/75 (54%), Positives = 62/75 (82%)
 Frame = +3

Query: 30  QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVE 209
           ++VQ FGRKKTATAV YCKRG GM+++NG P++L +P +L++K+ EP+LLLGK +F+ V+
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 210 IRVTVKGGGHVAQVY 254
           +R+   GGG+ ++VY
Sbjct: 68  MRIRATGGGNTSRVY 82


>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
           contains Pfam profile PF00380: ribosomal protein S9
          Length = 430

 Score = 34.7 bits (76), Expect = 0.038
 Identities = 21/68 (30%), Positives = 34/68 (50%)
 Frame = +3

Query: 48  GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVEIRVTVK 227
           GR+K + A  + + G G  +VN +  D+  P +L ++      L   +     +I+ TVK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368

Query: 228 GGGHVAQV 251
           GGG   QV
Sbjct: 369 GGGTTGQV 376


>At1g43570.1 68414.m05001 hypothetical protein
          Length = 348

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 387 QRRGSATSKLLSYCTRMSLISFFEASSXYFW*KAIR 280
           +R  S T + LSYC R+ LI     S   FW  A R
Sbjct: 19  KRISSWTGRFLSYCGRLQLIKSVLMSITNFWSSAFR 54


>At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 588

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 168 PILLLGKEKFSMVEIRVTVKGGGHVA 245
           P+L L + K S VE RV V+  GH+A
Sbjct: 139 PLLELMRRKMSWVEQRVVVRALGHLA 164


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,369,430
Number of Sequences: 28952
Number of extensions: 251483
Number of successful extensions: 709
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)