Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30649.Seq
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   129   3e-31
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   129   3e-31
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    28   0.99 
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   3.0  
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    25   7.0  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    25   9.2  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  129 bits (311), Expect = 3e-31
 Identities = 68/140 (48%), Positives = 87/140 (62%)
 Frame = +1

Query: 19  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGPPIGLG*XQTAAVQTSGTYPFARQGKILYG 198
           +Q+VQ FG+K  ATAVA+CK G G+++VNG P+ L   +   ++       A   K    
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 199 *XXXXXXXXXXXXXXLRYQQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 378
                             +QAISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120

Query: 379 CEPKKFGGPGARARYQKSYR 438
            EPKKFGG GARAR QKSYR
Sbjct: 121 MEPKKFGGHGARARQQKSYR 140



 Score = 65.3 bits (152), Expect = 5e-12
 Identities = 29/55 (52%), Positives = 39/55 (70%)
 Frame = +2

Query: 107 GRPLDLVXPRLLQYKLQEPILLLGKEKFSMVXIRVTVKGGGHVAQVYAINKLFQR 271
           G PL LV P +L+ K+ EPIL+ G +KF+ V IRV V GGGHV+Q+YAI +   +
Sbjct: 30  GAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAISK 84


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  129 bits (311), Expect = 3e-31
 Identities = 68/140 (48%), Positives = 87/140 (62%)
 Frame = +1

Query: 19  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGPPIGLG*XQTAAVQTSGTYPFARQGKILYG 198
           +Q+VQ FG+K  ATAVA+CK G G+++VNG P+ L   +   ++       A   K    
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 199 *XXXXXXXXXXXXXXLRYQQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 378
                             +QAISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120

Query: 379 CEPKKFGGPGARARYQKSYR 438
            EPKKFGG GARAR QKSYR
Sbjct: 121 MEPKKFGGHGARARQQKSYR 140



 Score = 65.3 bits (152), Expect = 5e-12
 Identities = 29/55 (52%), Positives = 39/55 (70%)
 Frame = +2

Query: 107 GRPLDLVXPRLLQYKLQEPILLLGKEKFSMVXIRVTVKGGGHVAQVYAINKLFQR 271
           G PL LV P +L+ K+ EPIL+ G +KF+ V IRV V GGGHV+Q+YAI +   +
Sbjct: 30  GAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAISK 84


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -3

Query: 181  LAEQKDRFLKFVLQ---QSGXNQVQWAARLHAAFHDHACNTQLRWRFS 47
            L + K  FL+  LQ   Q G    + + RLH+ F++H C + L+  FS
Sbjct: 1034 LMQVKMPFLRRSLQRISQQGYLAGRGSGRLHSLFNEHFCKSNLQLFFS 1081


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 204 SEXQSRVVVM*H-KFTLSTSYFKGSDRLLPEICR 302
           S+ +   V++ H KF    +Y KG+  ++P IC+
Sbjct: 759 SQLRRMAVIVKHGKFKKMDAYVKGAPEIMPSICK 792


>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 16/58 (27%), Positives = 21/58 (36%)
 Frame = +3

Query: 123 WLXPDCCSTNFRNLSFCSARKNSLWLXSEXQSRVVVM*HKFTLSTSYFKGSDRLLPEI 296
           W   D  S N    S  S  K S W   E +  +        +  S  K  +RLLP +
Sbjct: 342 WSSSDMASLNDSLYSHPSVSKQSTWTEEELKEELESFGELVPVPFSSTKAFERLLPHL 399


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 419 DTRNLTVKPSRKPSGGIVAASCCH 490
           D  N+ VKP+  P+  +    CCH
Sbjct: 566 DRFNVIVKPALNPAERMTVRICCH 589


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,215,596
Number of Sequences: 5004
Number of extensions: 40738
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)