Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30649.Seq
         (528 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0152 - 1168928-1169377                                          149   2e-36
11_01_0155 - 1287003-1287452                                          149   2e-36
11_06_0598 - 25391923-25393197                                         28   5.3  
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849...    28   5.3  

>12_01_0152 - 1168928-1169377
          Length = 149

 Score =  149 bits (360), Expect = 2e-36
 Identities = 78/145 (53%), Positives = 95/145 (65%), Gaps = 2/145 (1%)
 Frame = +1

Query: 10  REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGPPIGLG*XQTAAVQTSGTYPFARQGKI 189
           R P   VQ FGRKKTA AV+YCK G G+++VNG PI L   +   ++     P    G+ 
Sbjct: 7   RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIEL--IRPEMLRLKAFEPILLAGRS 64

Query: 190 LYG*XXXXXXXXXXXXXXLRY--QQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLV 363
            +                  Y  +QAI+KAL+A+YQKYVDEASKKE+KDI  +YDR+LLV
Sbjct: 65  RFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLV 124

Query: 364 ADPRRCEPKKFGGPGARARYQKSYR 438
           ADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 125 ADPRRCEPKKFGGRGARARFQKSYR 149



 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 22/51 (43%), Positives = 36/51 (70%)
 Frame = +2

Query: 107 GRPLDLVXPRLLQYKLQEPILLLGKEKFSMVXIRVTVKGGGHVAQVYAINK 259
           G P++L+ P +L+ K  EPILL G+ +F  + +R+ V+GGG  +Q+YAI +
Sbjct: 39  GVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQ 89


>11_01_0155 - 1287003-1287452
          Length = 149

 Score =  149 bits (360), Expect = 2e-36
 Identities = 78/145 (53%), Positives = 95/145 (65%), Gaps = 2/145 (1%)
 Frame = +1

Query: 10  REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGPPIGLG*XQTAAVQTSGTYPFARQGKI 189
           R P   VQ FGRKKTA AV+YCK G G+++VNG PI L   +   ++     P    G+ 
Sbjct: 7   RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIEL--IRPEMLRLKAFEPILLAGRS 64

Query: 190 LYG*XXXXXXXXXXXXXXLRY--QQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLV 363
            +                  Y  +QAI+KAL+A+YQKYVDEASKKE+KDI  +YDR+LLV
Sbjct: 65  RFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLV 124

Query: 364 ADPRRCEPKKFGGPGARARYQKSYR 438
           ADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 125 ADPRRCEPKKFGGRGARARFQKSYR 149



 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 22/51 (43%), Positives = 36/51 (70%)
 Frame = +2

Query: 107 GRPLDLVXPRLLQYKLQEPILLLGKEKFSMVXIRVTVKGGGHVAQVYAINK 259
           G P++L+ P +L+ K  EPILL G+ +F  + +R+ V+GGG  +Q+YAI +
Sbjct: 39  GVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQ 89


>11_06_0598 - 25391923-25393197
          Length = 424

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -2

Query: 419 LARAPGPPNFLGSQRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIRAF 267
           LA    PP  L S      TS L  + T +  ++    S+TY    AIR F
Sbjct: 254 LATLVSPPKLLQSLNISGITSGLPDWITELDQLTKITLSNTYLGEDAIRVF 304


>08_02_0526 +
           18184146-18184168,18184247-18184438,18184846-18184954,
           18185071-18185220,18185973-18186136,18186273-18186359,
           18187083-18187137,18187911-18188333
          Length = 400

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 2   RQDVSPSRPSKYSDVRKPPPQLRIAS 79
           R+  S S P K SD R PPP+ R  S
Sbjct: 33  RRSTSRSPPPKKSDSRSPPPRRRSTS 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,645,285
Number of Sequences: 37544
Number of extensions: 311728
Number of successful extensions: 837
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)