Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30649.Seq
         (528 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)             116   2e-26
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)                        33   0.15 
SB_43117| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-10)                 28   5.5  
SB_54400| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_45111| Best HMM Match : rve (HMM E-Value=1.2e-24)                   27   9.6  
SB_51918| Best HMM Match : DUF1610 (HMM E-Value=0.74)                  27   9.6  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score =  116 bits (278), Expect = 2e-26
 Identities = 53/62 (85%), Positives = 59/62 (95%)
 Frame = +1

Query: 253 QQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKS 432
           +QAISK+L+A+YQKYVDE SKKEI+DILVQYDRSLLVADPRR E KKFGGPGAR+RYQKS
Sbjct: 46  RQAISKSLVAYYQKYVDEVSKKEIRDILVQYDRSLLVADPRRTEAKKFGGPGARSRYQKS 105

Query: 433 YR 438
           YR
Sbjct: 106 YR 107



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 24/41 (58%), Positives = 32/41 (78%)
 Frame = +2

Query: 149 KLQEPILLLGKEKFSMVXIRVTVKGGGHVAQVYAINKLFQR 271
           K++EPILLLGKE+F  V IRV VKGGGH +++YAI +   +
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAIRQAISK 51


>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
          Length = 119

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 274 LIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 384
           ++AF QKY+D   +KE     +Q+ + +LV+  R CE
Sbjct: 53  VLAFRQKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89


>SB_43117| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-10)
          Length = 385

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +3

Query: 69  VLQAWSWNAACKRAAHWTWLXPDCCSTNFRNLSFCS 176
           VL  + W+       +W WL    CS +  NL+  S
Sbjct: 244 VLAGYKWHLGLHTCRYWVWLDLLFCSASIANLAAIS 279


>SB_54400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 723

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = +3

Query: 57  HRSCVLQAWSWNAACKRAAHWTWLXPDCCSTNFRNLSFCSA 179
           H+ C+ Q      A +  +  TW+   C   NF    F S+
Sbjct: 42  HKKCIYQTTKSYEALQNNSKLTWICSSCLFPNFSTTHFMSS 82


>SB_45111| Best HMM Match : rve (HMM E-Value=1.2e-24)
          Length = 1575

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/56 (26%), Positives = 20/56 (35%)
 Frame = +3

Query: 99  CKRAAHWTWLXPDCCSTNFRNLSFCSARKNSLWLXSEXQSRVVVM*HKFTLSTSYF 266
           C     W+    +C +   R  SF S R    WL     +    + H F    SYF
Sbjct: 489 CDTCKEWSMDRLECTTCGVRRHSFTSIRAFCDWLFGGSNAGYTCLAHNFKGYDSYF 544


>SB_51918| Best HMM Match : DUF1610 (HMM E-Value=0.74)
          Length = 378

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/56 (26%), Positives = 20/56 (35%)
 Frame = +3

Query: 99  CKRAAHWTWLXPDCCSTNFRNLSFCSARKNSLWLXSEXQSRVVVM*HKFTLSTSYF 266
           C     W     +C +   R  SF S+R    WL     +    + H F    SYF
Sbjct: 287 CDTCKEWPMDRLECTTCGVRKHSFTSSRAFCDWLFGGSNAGYTCLAHNFKGYDSYF 342


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,291,197
Number of Sequences: 59808
Number of extensions: 334772
Number of successful extensions: 771
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)