Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30649.Seq
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...   139   1e-33
U23454-7|AAC46515.1|  612|Caenorhabditis elegans Hypothetical pr...    32   0.29 
Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical pr...    31   0.51 
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...    29   2.1  
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.        29   2.1  
L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z81514-5|CAB04192.2|  611|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score =  139 bits (336), Expect = 1e-33
 Identities = 73/142 (51%), Positives = 93/142 (65%), Gaps = 2/142 (1%)
 Frame = +1

Query: 19  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGPPIGLG*XQTAAVQTSGTYPFARQGKILYG 198
           +Q+VQ FGRKKTATAVA+CK+G G+++VNG P+     Q   ++     P    GK  + 
Sbjct: 5   VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQE--PLLLVGKERFQ 62

Query: 199 *XXXXXXXXXXXXXXLRY--QQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADP 372
                            Y  +QA++KAL+A+Y KYVDE SK+E+K+I   YD+SLLVADP
Sbjct: 63  DVDIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADP 122

Query: 373 RRCEPKKFGGPGARARYQKSYR 438
           RR E KKFGGPGARARYQKSYR
Sbjct: 123 RRRESKKFGGPGARARYQKSYR 144



 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 30/51 (58%), Positives = 42/51 (82%)
 Frame = +2

Query: 107 GRPLDLVXPRLLQYKLQEPILLLGKEKFSMVXIRVTVKGGGHVAQVYAINK 259
           GRPL+ + P++L+ KLQEP+LL+GKE+F  V IR+ V GGGHVAQ+YA+ +
Sbjct: 34  GRPLEFLEPQILRIKLQEPLLLVGKERFQDVDIRIRVSGGGHVAQIYAVRQ 84


>U23454-7|AAC46515.1|  612|Caenorhabditis elegans Hypothetical
           protein C10A4.1 protein.
          Length = 612

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = -3

Query: 247 VNLCYMTTTLDCXSDXNHREFFLAEQKDRFLKFVLQQSGXNQVQWAARLHAAFHDHACNT 68
           + LCY      C    +H E F A + DR  K + + S    +Q+A  L   + DH C  
Sbjct: 385 IPLCYALID-HCKESIDHPEAFKAIE-DRMQKELKKYSACRYLQFATLLDPRYKDHFCTD 442

Query: 67  QLRWRF 50
           + +  F
Sbjct: 443 EFKHMF 448


>Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical
           protein BE10.4 protein.
          Length = 301

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 295 YVDEASKKEIKDILVQYDRSLLVADPRRCE 384
           + DE  +KE+ D+  QYDRS+ + D  R E
Sbjct: 151 FCDEVQQKEVGDLFHQYDRSIEIIDKVRHE 180


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
           protein 1 protein.
          Length = 974

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -3

Query: 229 TTTLDCXSDXNHREFFLAEQKD-RF--LKFVLQQSG 131
           TT LDC  +  H EF+ AE  D RF  + F+ +Q G
Sbjct: 146 TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 181


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -3

Query: 229 TTTLDCXSDXNHREFFLAEQKD-RF--LKFVLQQSG 131
           TT LDC  +  H EF+ AE  D RF  + F+ +Q G
Sbjct: 21  TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 56


>L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical
           protein F09G8.3 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 355 LLVADPRRCEPKKFGGPGARARY 423
           LL  DPR+ E  K   PGARA++
Sbjct: 365 LLTLDPRKNERSKVNQPGARAKW 387


>Z81514-5|CAB04192.2|  611|Caenorhabditis elegans Hypothetical
           protein F26F2.6 protein.
          Length = 611

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = +3

Query: 69  VLQAWS---WNAACKRAAHWTWLXPDCCSTN 152
           +L+ W    W    K+ ++WTW+ P+  + N
Sbjct: 528 ILEKWHDFWWVGLIKKDSNWTWMLPELVTDN 558


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,590,236
Number of Sequences: 27780
Number of extensions: 239126
Number of successful extensions: 590
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)