Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30649.Seq
         (528 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...   152   2e-37
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same...   148   3e-36
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)           147   3e-36
At1g43570.1 68414.m05001 hypothetical protein                          31   0.36 
At3g24255.1 68416.m03045 expressed protein                             27   7.8  

>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
           to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
           thaliana]
          Length = 146

 Score =  152 bits (368), Expect = 2e-37
 Identities = 80/141 (56%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
 Frame = +1

Query: 22  QAVQVFGRKKTATAVAYCKRGHGMLRVNGPPIGLG*XQTAAVQTSGTYPFARQGKILYG* 201
           ++VQ FGRKKTATAV YCKRG GM+++NG PI L   Q   ++     P    GK  +  
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIEL--YQPEILRFKIFEPVLLLGKHRFAG 65

Query: 202 XXXXXXXXXXXXXXLRY--QQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPR 375
                           Y  +Q+I+KAL+A+YQKYVDE SKKEIKDIL++YDR+LLVADPR
Sbjct: 66  VDMRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPR 125

Query: 376 RCEPKKFGGPGARARYQKSYR 438
           RCE KKFGGPGARAR+QKSYR
Sbjct: 126 RCESKKFGGPGARARFQKSYR 146



 Score = 58.0 bits (134), Expect = 4e-09
 Identities = 23/51 (45%), Positives = 38/51 (74%)
 Frame = +2

Query: 107 GRPLDLVXPRLLQYKLQEPILLLGKEKFSMVXIRVTVKGGGHVAQVYAINK 259
           G P++L  P +L++K+ EP+LLLGK +F+ V +R+   GGG+ ++VYAI +
Sbjct: 36  GSPIELYQPEILRFKIFEPVLLLGKHRFAGVDMRIRATGGGNTSRVYAIRQ 86


>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
           GB:Q42340
          Length = 146

 Score =  148 bits (358), Expect = 3e-36
 Identities = 79/147 (53%), Positives = 98/147 (66%), Gaps = 2/147 (1%)
 Frame = +1

Query: 4   ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGPPIGLG*XQTAAVQTSGTYPFARQG 183
           A +   ++VQ FGRKKTA AV +CKRG G++++NG PI L   Q   ++     P    G
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIEL--FQPEILRFKIFEPILLLG 59

Query: 184 KILYG*XXXXXXXXXXXXXXLRY--QQAISKALIAFYQKYVDEASKKEIKDILVQYDRSL 357
           K  +                  Y  +Q+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+L
Sbjct: 60  KHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTL 119

Query: 358 LVADPRRCEPKKFGGPGARARYQKSYR 438
           LVADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 120 LVADPRRCEPKKFGGRGARSRYQKSYR 146



 Score = 64.1 bits (149), Expect = 6e-11
 Identities = 27/51 (52%), Positives = 39/51 (76%)
 Frame = +2

Query: 107 GRPLDLVXPRLLQYKLQEPILLLGKEKFSMVXIRVTVKGGGHVAQVYAINK 259
           G P++L  P +L++K+ EPILLLGK +F+ V +R+ V GGGH +QVYAI +
Sbjct: 36  GCPIELFQPEILRFKIFEPILLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQ 86


>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
          Length = 146

 Score =  147 bits (357), Expect = 3e-36
 Identities = 79/147 (53%), Positives = 98/147 (66%), Gaps = 2/147 (1%)
 Frame = +1

Query: 4   ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGPPIGLG*XQTAAVQTSGTYPFARQG 183
           A +   ++VQ FGRKKTA AV +CKRG G++++NG PI L   Q   ++     P    G
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIEL--FQPEILRFKIFEPVLLLG 59

Query: 184 KILYG*XXXXXXXXXXXXXXLRY--QQAISKALIAFYQKYVDEASKKEIKDILVQYDRSL 357
           K  +                  Y  +Q+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+L
Sbjct: 60  KHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTL 119

Query: 358 LVADPRRCEPKKFGGPGARARYQKSYR 438
           LVADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 120 LVADPRRCEPKKFGGRGARSRYQKSYR 146



 Score = 63.7 bits (148), Expect = 7e-11
 Identities = 26/51 (50%), Positives = 39/51 (76%)
 Frame = +2

Query: 107 GRPLDLVXPRLLQYKLQEPILLLGKEKFSMVXIRVTVKGGGHVAQVYAINK 259
           G P++L  P +L++K+ EP+LLLGK +F+ V +R+ V GGGH +QVYAI +
Sbjct: 36  GCPIELFQPEILRFKIFEPVLLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQ 86


>At1g43570.1 68414.m05001 hypothetical protein
          Length = 348

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 380 QRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIR 273
           +R  S T + LSYC R+ LI     S T FW  A R
Sbjct: 19  KRISSWTGRFLSYCGRLQLIKSVLMSITNFWSSAFR 54


>At3g24255.1 68416.m03045 expressed protein
          Length = 836

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 377 RRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIR 273
           R G  T++ LS+  R+ LIS    S T FW  A R
Sbjct: 142 RIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFR 176


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,935,010
Number of Sequences: 28952
Number of extensions: 227716
Number of successful extensions: 628
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)