Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30646.Seq
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                        101   9e-22
SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_9909| Best HMM Match : AAA (HMM E-Value=0)                          43   3e-04
SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)               42   6e-04
SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)                40   0.002
SB_48561| Best HMM Match : AAA (HMM E-Value=0)                         35   0.088
SB_33442| Best HMM Match : AAA (HMM E-Value=0)                         34   0.15 
SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_28977| Best HMM Match : AAA (HMM E-Value=0)                         29   5.8  
SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_19460| Best HMM Match : AAA (HMM E-Value=0)                         28   7.6  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score =  101 bits (241), Expect = 9e-22
 Identities = 46/59 (77%), Positives = 56/59 (94%)
 Frame = +2

Query: 80  DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETV 256
           D+L+TAIL+ K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRGDTVL+KGK+RK+TV
Sbjct: 5   DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRGDTVLIKGKKRKDTV 63



 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 36/42 (85%), Positives = 39/42 (92%)
 Frame = +1

Query: 580 APDTVIHCDGEPIKRXEEEEALXAVGYDDIGGCRKQLAQIKE 705
           APDTVIHC+GEP+KR EEEE+L  VGYDDIGGCRKQLAQIKE
Sbjct: 131 APDTVIHCEGEPVKREEEEESLNEVGYDDIGGCRKQLAQIKE 172



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 21/23 (91%), Positives = 23/23 (100%)
 Frame = +3

Query: 510 VRGGMRAVEFKVVETDPSPFCIV 578
           VRGGMRAVEFKV+ETDPSP+CIV
Sbjct: 108 VRGGMRAVEFKVIETDPSPYCIV 130



 Score = 32.3 bits (70), Expect = 0.47
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 741
           V +DDIGG      +++E+V+ P+ HP  F
Sbjct: 307 VSWDDIGGLEGVKRELQELVQYPVEHPDKF 336



 Score = 31.9 bits (69), Expect = 0.62
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVV 351
           L +G+  +   CIVLSDD   D+KIRM             DVV
Sbjct: 53  LIKGKKRKDTVCIVLSDDTISDDKIRMNRVVRMNLRVRLGDVV 95


>SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 802

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 23/65 (35%), Positives = 39/65 (60%)
 Frame = +1

Query: 556 IHHHFASWAPDTVIHCDGEPIKRXEEEEALXAVGYDDIGGCRKQLAQIKEMVELPLRHPS 735
           I+++ ++   + VIH  G  IK+  + EA   V +  IGG + Q+  ++EM+E+PL +P 
Sbjct: 223 IYNYVSAMETNLVIHPFGSVIKK--DSEAKKGVSFQSIGGLKTQIQAVREMIEMPLTNPE 280

Query: 736 LFKGY 750
           LF  Y
Sbjct: 281 LFTAY 285



 Score = 31.5 bits (68), Expect = 0.82
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 744
           V + D+GG      ++KE VE PL+HP  F+
Sbjct: 534 VHWSDVGGNEMIKRKLKEAVEWPLKHPEAFQ 564


>SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 21/51 (41%), Positives = 29/51 (56%)
 Frame = +1

Query: 592 VIHCDGEPIKRXEEEEALXAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 744
           V+  D +P+    + E      Y DIGG   Q+ +IKE VELPL HP L++
Sbjct: 357 VLSDDADPMVTVMKLEKAPQESYADIGGLDTQIQEIKESVELPLTHPELYE 407


>SB_9909| Best HMM Match : AAA (HMM E-Value=0)
          Length = 400

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/44 (40%), Positives = 27/44 (61%)
 Frame = +1

Query: 610 EPIKRXEEEEALXAVGYDDIGGCRKQLAQIKEMVELPLRHPSLF 741
           +P     + E    V Y DIGGC++Q+ +++E+VE PL HP  F
Sbjct: 67  DPTVTMMQVEEKPDVTYSDIGGCKEQIDKLREVVETPLLHPERF 110


>SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 15/29 (51%), Positives = 24/29 (82%)
 Frame = +1

Query: 658 YDDIGGCRKQLAQIKEMVELPLRHPSLFK 744
           Y+ +GG  KQ+ +IKE++ELP++HP LF+
Sbjct: 176 YEMVGGLDKQIKEIKEVIELPVKHPELFE 204


>SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
          Length = 779

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = +1

Query: 610 EPIKRXEEEEALXAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 744
           +P+      E    + Y D+GG  +Q+ +++E++ELPL +P LF+
Sbjct: 118 DPLVYNMSHEDPGNISYSDVGGLSEQIRELREVIELPLTNPELFQ 162


>SB_48561| Best HMM Match : AAA (HMM E-Value=0)
          Length = 2021

 Score = 34.7 bits (76), Expect = 0.088
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 741
           V +D +GG  KQ+  +KEM+  PL +P +F
Sbjct: 881 VKFDSVGGLNKQIQALKEMILFPLVYPEVF 910


>SB_33442| Best HMM Match : AAA (HMM E-Value=0)
          Length = 369

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +1

Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 744
           V Y +IGG   Q  +I+E VELPL H  L+K
Sbjct: 161 VSYAEIGGMDIQKQEIREAVELPLTHFELYK 191


>SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1086

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 741
           + + D+GG      +I + ++LPL HP LF
Sbjct: 809 ISWKDVGGLDSVKEEILDTIQLPLLHPELF 838


>SB_28977| Best HMM Match : AAA (HMM E-Value=0)
          Length = 442

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKG 747
           V + DI G       +KE V LP++ P LF G
Sbjct: 94  VKWSDIAGLESAKEALKEAVILPIKFPHLFTG 125


>SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 908

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 658 YDDIGGCRKQLAQIKEMVELPLRHPSLF 741
           +DD+GG       +++ +E PL HP  F
Sbjct: 483 WDDVGGLEGVKQALRQAIEWPLLHPEAF 510


>SB_19460| Best HMM Match : AAA (HMM E-Value=0)
          Length = 340

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 658 YDDIGGCRKQLAQIKEMVELPLRHPSLF 741
           +DD+GG       +++ +E PL HP  F
Sbjct: 12  WDDVGGLEGVKQALRQAIEWPLLHPEAF 39


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,040,174
Number of Sequences: 59808
Number of extensions: 510391
Number of successful extensions: 1307
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)