Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30646.Seq
(797 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 200 9e-52
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 193 1e-49
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 193 1e-49
U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical pr... 42 7e-04
AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome re... 42 7e-04
AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome re... 42 7e-04
Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical pr... 41 0.001
AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome re... 41 0.001
AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical ... 39 0.004
AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical ... 39 0.004
U53149-2|AAM29664.1| 451|Caenorhabditis elegans Hypothetical pr... 35 0.059
U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regu... 35 0.059
AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome re... 35 0.059
Z69664-3|CAC42312.1| 339|Caenorhabditis elegans Hypothetical pr... 33 0.31
Z69664-2|CAA93516.2| 342|Caenorhabditis elegans Hypothetical pr... 33 0.31
Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical p... 33 0.31
Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical p... 33 0.31
Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical pr... 33 0.31
Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical p... 33 0.31
Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical pr... 33 0.31
Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical pr... 33 0.31
DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expres... 33 0.31
AF125450-3|AAD12817.1| 309|Caenorhabditis elegans Hypothetical ... 29 5.1
Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical pr... 28 8.9
AC024859-23|ABD63209.1| 299|Caenorhabditis elegans Hypothetical... 28 8.9
AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to ye... 28 8.9
AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1 ... 28 8.9
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 200 bits (488), Expect = 9e-52
Identities = 91/174 (52%), Positives = 122/174 (70%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
+ +G+ + + I++SD++CP+EK+RM DVVSI P P++ YG R+H+L
Sbjct: 64 ILKGKKRKESVAIIVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRIHVL 123
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWA 582
PIDD++EGLTGNLF+V+LKPYF+EAYRP+H+ D F A K + +
Sbjct: 124 PIDDTIEGLTGNLFDVFLKPYFLEAYRPLHKGDIFTVQAAMRTVEFKVVETEPAPACIVS 183
Query: 583 PDTVIHCDGEPIKRXEEEEALXAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 744
PDT+IH +G+PIKR EEEE++ +GYDD+GG RKQLAQIKEMVELPLRHP LFK
Sbjct: 184 PDTMIHYEGDPIKREEEEESMNDIGYDDLGGVRKQLAQIKEMVELPLRHPQLFK 237
Score = 90.6 bits (215), Expect = 1e-18
Identities = 42/63 (66%), Positives = 55/63 (87%)
Frame = +2
Query: 71 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
K D+LSTAIL+ K +PNRLIV+++ DDNSV+A+SQAKM++L LFRGD V+LKGK+RKE
Sbjct: 13 KKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVILKGKKRKE 72
Query: 251 TVA 259
+VA
Sbjct: 73 SVA 75
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 658 YDDIGGCRKQLAQIKEMVELPLRHPSLF 741
+ DIGG + +++E+V+ P+ HP +
Sbjct: 482 WSDIGGLQNVKRELQELVQYPVEHPEKY 509
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 193 bits (470), Expect = 1e-49
Identities = 95/174 (54%), Positives = 119/174 (68%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
+ +G+ + IVL+ DNCP++KI+M DVVSI+ ++YGKRVH+L
Sbjct: 64 ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWA 582
PIDD++EGLTGNLF+V+L+PYF +AYRP+H+ D F A K + A
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVEFKVVETDPAPACIVA 182
Query: 583 PDTVIHCDGEPIKRXEEEEALXAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 744
PDTVIH +G+PIKR EEEEAL VGYDD+GG RKQLAQIKEMVELPLRHP LFK
Sbjct: 183 PDTVIHYEGDPIKREEEEEALNEVGYDDLGGVRKQLAQIKEMVELPLRHPQLFK 236
Score = 89.0 bits (211), Expect = 3e-18
Identities = 40/63 (63%), Positives = 56/63 (88%)
Frame = +2
Query: 71 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
K D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13 KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72
Query: 251 TVA 259
TV+
Sbjct: 73 TVS 75
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 658 YDDIGGCRKQLAQIKEMVELPLRHPSLF 741
+ DIGG + +++E+V+ P+ HP +
Sbjct: 481 WSDIGGLQNVKRELQELVQYPVEHPEKY 508
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 193 bits (470), Expect = 1e-49
Identities = 95/174 (54%), Positives = 119/174 (68%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
+ +G+ + IVL+ DNCP++KI+M DVVSI+ ++YGKRVH+L
Sbjct: 64 ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWA 582
PIDD++EGLTGNLF+V+L+PYF +AYRP+H+ D F A K + A
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVEFKVVETDPAPACIVA 182
Query: 583 PDTVIHCDGEPIKRXEEEEALXAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 744
PDTVIH +G+PIKR EEEEAL VGYDD+GG RKQLAQIKEMVELPLRHP LFK
Sbjct: 183 PDTVIHYEGDPIKREEEEEALNEVGYDDLGGVRKQLAQIKEMVELPLRHPQLFK 236
Score = 89.0 bits (211), Expect = 3e-18
Identities = 40/63 (63%), Positives = 56/63 (88%)
Frame = +2
Query: 71 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
K D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13 KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72
Query: 251 TVA 259
TV+
Sbjct: 73 TVS 75
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 658 YDDIGGCRKQLAQIKEMVELPLRHPSLF 741
+ DIGG + +++E+V+ P+ HP +
Sbjct: 481 WSDIGGLQNVKRELQELVQYPVEHPEKY 508
>U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical
protein C10G11.8 protein.
Length = 438
Score = 44.4 bits (100), Expect = 1e-04
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = +1
Query: 658 YDDIGGCRKQLAQIKEMVELPLRHPSLFK 744
+DDIGGC Q+ ++KE VELPL HP ++
Sbjct: 182 FDDIGGCESQIQELKESVELPLTHPEYYE 210
>Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical
protein Y49E10.1 protein.
Length = 416
Score = 41.5 bits (93), Expect = 7e-04
Identities = 15/28 (53%), Positives = 23/28 (82%)
Frame = +1
Query: 658 YDDIGGCRKQLAQIKEMVELPLRHPSLF 741
Y+ +GG KQ+ +IKE++ELP++HP LF
Sbjct: 158 YEMVGGLDKQIKEIKEVIELPVKHPELF 185
>AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform b
protein.
Length = 398
Score = 41.5 bits (93), Expect = 7e-04
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +1
Query: 610 EPIKRXEEEEALXAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 744
+P+ E + Y D+GG +Q+ +++E+VELPL +P LFK
Sbjct: 125 DPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFK 169
>AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform a
protein.
Length = 406
Score = 41.5 bits (93), Expect = 7e-04
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +1
Query: 610 EPIKRXEEEEALXAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 744
+P+ E + Y D+GG +Q+ +++E+VELPL +P LFK
Sbjct: 133 DPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFK 177
>Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical
protein C52E4.4 protein.
Length = 435
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +1
Query: 610 EPIKRXEEEEALXAVGYDDIGGCRKQLAQIKEMVELPLRHPSLF 741
+P + E V Y D+GGC+ Q+ +++E+VE PL HP +
Sbjct: 160 DPTVTMMQVEEKPDVTYSDVGGCKDQIEKLREVVETPLLHPERY 203
>AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 2 protein.
Length = 443
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +1
Query: 592 VIHCDGEPIKRXEEEEALXAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 744
V+ D +P+ + E Y D+GG +Q+ +IKE VELPL HP ++
Sbjct: 165 VLSDDTDPMVSVMKLEKAPQETYADVGGLDQQIQEIKEAVELPLTHPEYYE 215
>AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical
protein F56F11.4a protein.
Length = 411
Score = 39.1 bits (87), Expect = 0.004
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = +1
Query: 658 YDDIGGCRKQLAQIKEMVELPLRHPSLF 741
Y+ +GG Q+ +IKE++ELP++HP LF
Sbjct: 153 YEMVGGLDTQIKEIKEVIELPVKHPELF 180
>AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical
protein F56F11.4b protein.
Length = 432
Score = 39.1 bits (87), Expect = 0.004
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = +1
Query: 658 YDDIGGCRKQLAQIKEMVELPLRHPSLF 741
Y+ +GG Q+ +IKE++ELP++HP LF
Sbjct: 174 YEMVGGLDTQIKEIKEVIELPVKHPELF 201
>U53149-2|AAM29664.1| 451|Caenorhabditis elegans Hypothetical
protein C24B5.2a protein.
Length = 451
Score = 35.1 bits (77), Expect = 0.059
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKG 747
V DD+ GC A ++E V LP +P+LFKG
Sbjct: 175 VRMDDVAGCHSAKAALEEAVILPALNPNLFKG 206
>U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 3 protein.
Length = 414
Score = 35.1 bits (77), Expect = 0.059
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 744
+ Y DIGG Q +++E VELPL H L++
Sbjct: 158 ISYGDIGGLDMQKQEVREAVELPLTHGELYQ 188
>AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 5 protein.
Length = 430
Score = 35.1 bits (77), Expect = 0.059
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 658 YDDIGGCRKQLAQIKEMVELPLRHPSLF 741
Y DIGGC KQ+ ++ E V LP+ H F
Sbjct: 176 YSDIGGCDKQIQELIEAVVLPMTHKDRF 203
>Z69664-3|CAC42312.1| 339|Caenorhabditis elegans Hypothetical
protein K04D7.2b protein.
Length = 339
Score = 32.7 bits (71), Expect = 0.31
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +1
Query: 658 YDDIGGCRKQLAQIKEMVELPLRHPS 735
+D+IGGC + +A++K+ + LPLR S
Sbjct: 79 WDEIGGCEELVAELKDRIILPLRFAS 104
>Z69664-2|CAA93516.2| 342|Caenorhabditis elegans Hypothetical
protein K04D7.2a protein.
Length = 342
Score = 32.7 bits (71), Expect = 0.31
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +1
Query: 658 YDDIGGCRKQLAQIKEMVELPLRHPS 735
+D+IGGC + +A++K+ + LPLR S
Sbjct: 82 WDEIGGCEELVAELKDRIILPLRFAS 107
>Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 32.7 bits (71), Expect = 0.31
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 649 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKGY 750
+VG+D +GG + +KE+V P+ +P +F+ +
Sbjct: 387 SVGFDQVGGLGHHIQSLKEVVLFPMLYPEVFEKF 420
>Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 32.7 bits (71), Expect = 0.31
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 649 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKGY 750
+VG+D +GG + +KE+V P+ +P +F+ +
Sbjct: 385 SVGFDQVGGLGHHIQSLKEVVLFPMLYPEVFEKF 418
>Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 32.7 bits (71), Expect = 0.31
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 649 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKGY 750
+VG+D +GG + +KE+V P+ +P +F+ +
Sbjct: 387 SVGFDQVGGLGHHIQSLKEVVLFPMLYPEVFEKF 420
>Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 32.7 bits (71), Expect = 0.31
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 649 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKGY 750
+VG+D +GG + +KE+V P+ +P +F+ +
Sbjct: 387 SVGFDQVGGLGHHIQSLKEVVLFPMLYPEVFEKF 420
>Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 32.7 bits (71), Expect = 0.31
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 649 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKGY 750
+VG+D +GG + +KE+V P+ +P +F+ +
Sbjct: 385 SVGFDQVGGLGHHIQSLKEVVLFPMLYPEVFEKF 418
>Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 32.7 bits (71), Expect = 0.31
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 649 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKGY 750
+VG+D +GG + +KE+V P+ +P +F+ +
Sbjct: 387 SVGFDQVGGLGHHIQSLKEVVLFPMLYPEVFEKF 420
>DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48
expression abnormal protein protein.
Length = 1291
Score = 32.7 bits (71), Expect = 0.31
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 649 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKGY 750
+VG+D +GG + +KE+V P+ +P +F+ +
Sbjct: 387 SVGFDQVGGLGHHIQSLKEVVLFPMLYPEVFEKF 420
>AF125450-3|AAD12817.1| 309|Caenorhabditis elegans Hypothetical
protein Y39F10A.3 protein.
Length = 309
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 85 IIRAFIICHFIQNLLLESKNYYNFY 11
++ AF++C + N+LL SK+ Y FY
Sbjct: 8 LLLAFVVCLTLFNVLLWSKSNYGFY 32
>Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical
protein F42E11.4 protein.
Length = 250
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 50 LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 199
L K+ NK+ +DL T LR++ +++ E V+ N AK+E +
Sbjct: 61 LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110
>AC024859-23|ABD63209.1| 299|Caenorhabditis elegans Hypothetical
protein Y71H2AM.25 protein.
Length = 299
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 538 SKWSKQIHHHFASWAPDTVIHCDGEPIKRXEEEEALXAVGY 660
S ++K + S++ +I CD K EE+ A+ AV Y
Sbjct: 117 SMYAKATNGSLLSFSEQQLIDCDDHGFKGCEEQPAINAVSY 157
>AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 4 protein.
Length = 430
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKG 747
V + DI G +KE V LP++ P LF G
Sbjct: 115 VKWTDIAGLEGAKEALKEAVILPIKFPQLFTG 146
>AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1
protein.
Length = 250
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 50 LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 199
L K+ NK+ +DL T LR++ +++ E V+ N AK+E +
Sbjct: 61 LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,223,695
Number of Sequences: 27780
Number of extensions: 371976
Number of successful extensions: 953
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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