Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30646.Seq
(797 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 196 1e-50
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 196 1e-50
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 192 3e-49
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 44 1e-04
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 44 1e-04
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 44 1e-04
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 44 2e-04
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 42 4e-04
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 42 4e-04
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 42 6e-04
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 36 0.024
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 34 0.095
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 34 0.095
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 33 0.17
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 33 0.17
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 33 0.29
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 33 0.29
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 33 0.29
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 33 0.29
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak... 31 1.2
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 31 1.2
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 31 1.2
At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containi... 30 1.5
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 30 2.0
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 30 2.0
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 30 2.0
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 29 2.7
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 29 2.7
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 29 3.6
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 29 3.6
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 28 6.2
At2g33255.1 68415.m04075 haloacid dehalogenase-like hydrolase fa... 28 8.3
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 196 bits (479), Expect = 1e-50
Identities = 92/174 (52%), Positives = 116/174 (66%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CI L+D+ C + KIRM DV+S+ CP VKYGKRVHIL
Sbjct: 62 LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWA 582
P+DD+VEG+TGNLF+ YLKPYF+EAYRP+ + D F G K + + A
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVA 181
Query: 583 PDTVIHCDGEPIKRXEEEEALXAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 744
PDT I C+GEP+KR E+EE L VGYDD+GG RKQ+AQI+E+VELPLRHP LFK
Sbjct: 182 PDTEIFCEGEPVKR-EDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFK 234
Score = 93.9 bits (223), Expect = 1e-19
Identities = 42/65 (64%), Positives = 55/65 (84%)
Frame = +2
Query: 62 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
+D+K+ D STAIL RK PNRL+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK+
Sbjct: 8 SDSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKGKK 67
Query: 242 RKETV 256
RK+TV
Sbjct: 68 RKDTV 72
Score = 31.1 bits (67), Expect = 0.89
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKGY 750
V ++DIGG +++E V+ P+ HP F+ +
Sbjct: 477 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKF 509
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 196 bits (478), Expect = 1e-50
Identities = 92/174 (52%), Positives = 116/174 (66%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CI L+D+ C + KIRM DV+S+ CP VKYGKRVHIL
Sbjct: 62 LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWA 582
P+DD+VEG+TGNLF+ YLKPYF+EAYRP+ + D F G K + + A
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVA 181
Query: 583 PDTVIHCDGEPIKRXEEEEALXAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 744
PDT I C+GEP+KR E+EE L VGYDD+GG RKQ+AQI+E+VELPLRHP LFK
Sbjct: 182 PDTEIFCEGEPVKR-EDEERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFK 234
Score = 96.7 bits (230), Expect = 2e-20
Identities = 44/65 (67%), Positives = 56/65 (86%)
Frame = +2
Query: 62 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
+D+KS D STAIL RK PNRL+V+EA++DDNSVV+L A ME+LQLFRGDT+L+KGK+
Sbjct: 8 SDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILIKGKK 67
Query: 242 RKETV 256
RK+TV
Sbjct: 68 RKDTV 72
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKGY 750
V ++DIGG +++E V+ P+ HP F+ +
Sbjct: 477 VSWNDIGGLENVKRELQETVQYPVEHPEKFEKF 509
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 192 bits (467), Expect = 3e-49
Identities = 89/174 (51%), Positives = 115/174 (66%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CI L+D+ C + KIRM DV+S+ CP VKYG RVHIL
Sbjct: 63 LIKGKKRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVHIL 122
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWA 582
P+DD++EG++GN+F+ YLKPYF+EAYRP+ + D F G K + + A
Sbjct: 123 PLDDTIEGVSGNIFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSIEFKVIETDPAEYCVVA 182
Query: 583 PDTVIHCDGEPIKRXEEEEALXAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 744
PDT I C+GEPIKR E+EE L VGYDD+GG RKQ+AQI+E+VELPLRHP LFK
Sbjct: 183 PDTEIFCEGEPIKR-EDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFK 235
Score = 84.2 bits (199), Expect = 9e-17
Identities = 40/66 (60%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Frame = +2
Query: 62 ADNK-SPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 238
+D+K + D STAIL +K NRL+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK
Sbjct: 8 SDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILIKGK 67
Query: 239 RRKETV 256
+RK+TV
Sbjct: 68 KRKDTV 73
Score = 31.1 bits (67), Expect = 0.89
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKGY 750
V ++DIGG +++E V+ P+ HP F+ +
Sbjct: 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKF 510
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +1
Query: 610 EPIKRXEEEEALXAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 744
+P+ + E + YD IGG +Q+ +IKE++ELP++HP LF+
Sbjct: 144 DPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFE 188
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +1
Query: 610 EPIKRXEEEEALXAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 744
+P+ + E + YD IGG +Q+ +IKE++ELP++HP LF+
Sbjct: 144 DPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFE 188
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 44.0 bits (99), Expect = 1e-04
Identities = 16/28 (57%), Positives = 23/28 (82%)
Frame = +1
Query: 658 YDDIGGCRKQLAQIKEMVELPLRHPSLF 741
Y DIGGC++Q+ +I+E+VELP+ HP F
Sbjct: 204 YSDIGGCKEQIEKIREVVELPMLHPEKF 231
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 43.6 bits (98), Expect = 2e-04
Identities = 15/30 (50%), Positives = 25/30 (83%)
Frame = +1
Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 741
V Y+D+GGC++Q+ +++E+VELP+ HP F
Sbjct: 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKF 194
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +1
Query: 592 VIHCDGEPIKRXEEEEALXAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 744
++ + +P+ + E Y DIGG Q+ +IKE VELPL HP L++
Sbjct: 165 ILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYE 215
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +1
Query: 592 VIHCDGEPIKRXEEEEALXAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 744
++ + +P+ + E Y DIGG Q+ +IKE VELPL HP L++
Sbjct: 165 ILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYE 215
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = +1
Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFK 744
V Y+DIGGC Q +I+E VELPL H L+K
Sbjct: 152 VSYNDIGGCDIQKQEIREAVELPLTHHELYK 182
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 36.3 bits (80), Expect = 0.024
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKGY 750
+ +DDIGG + + +KEMV PL +P F Y
Sbjct: 378 INFDDIGGLSEYINDLKEMVFFPLLYPEFFASY 410
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 34.3 bits (75), Expect = 0.095
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 741
+ Y +GG Q+ +++E +ELPL +P LF
Sbjct: 136 ISYSAVGGLGDQIRELRESIELPLMNPELF 165
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 34.3 bits (75), Expect = 0.095
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 741
+ Y +GG Q+ +++E +ELPL +P LF
Sbjct: 136 ISYSAVGGLGDQIRELRESIELPLMNPELF 165
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 33.5 bits (73), Expect = 0.17
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 741
+G++D+GG IKEM+ELP + P +F
Sbjct: 841 LGWEDVGGVTDIKNAIKEMIELPSKFPKIF 870
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKG 747
V + DIG + ++E+V LPLR P LFKG
Sbjct: 411 VTFADIGSLDETKESLQELVMLPLRRPDLFKG 442
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
Pfam profile PF00004: ATPase, AAA family
Length = 1122
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 741
V +DDIG K +KE+V LPL+ P LF
Sbjct: 817 VTFDDIGALEKVKDILKELVMLPLQRPELF 846
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 741
V +DDIG +KE+V LPL+ P LF
Sbjct: 960 VSFDDIGALENVKETLKELVMLPLQRPELF 989
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 32.7 bits (71), Expect = 0.29
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 658 YDDIGGCRKQLAQIKEMVELPLRHPSLFK 744
Y+DIGG KQ+ ++ E + LP+ H F+
Sbjct: 170 YNDIGGLEKQIQELVEAIVLPMTHKERFE 198
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 32.7 bits (71), Expect = 0.29
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 658 YDDIGGCRKQLAQIKEMVELPLRHPSLFK 744
Y+DIGG KQ+ ++ E + LP+ H F+
Sbjct: 169 YNDIGGLEKQIQELVEAIVLPMTHKEQFE 197
>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
similarity to Pfam domain PF01612: 3'-5' exonuclease
Length = 263
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -2
Query: 214 TTEELKLLHFGL*KCHD*VVIAD 146
TTEELK+ H+ L KC D +V+A+
Sbjct: 3 TTEELKISHYKLYKCFDFLVVAN 25
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKG 747
V + DIG + ++E+V LPLR P LF G
Sbjct: 518 VTFKDIGALDEIKESLQELVMLPLRRPDLFTG 549
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKG 747
V + DIG + ++E+V LPLR P LF G
Sbjct: 513 VTFKDIGALDEIKESLQELVMLPLRRPDLFTG 544
>At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 455
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 369 RTRSDGYHIRKTHTKVVSHNTVHPNFLIRAII 274
RT S+ +++ HTK++ HN + L+R +I
Sbjct: 28 RTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLI 59
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 741
V +DDIG + E+V LP+R P LF
Sbjct: 147 VKFDDIGALEHVKKTLNELVILPMRRPELF 176
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 741
V +DD+GG I + V+LPL H LF
Sbjct: 655 VKWDDVGGLEDVKTSILDTVQLPLLHKDLF 684
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 741
V + DIG +KE+V LPL+ P LF
Sbjct: 947 VSFSDIGALENVKDTLKELVMLPLQRPELF 976
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKG 747
V +DDI G + EMV PL P +FKG
Sbjct: 7 VRWDDIAGLEHAKKCVTEMVIWPLLRPDIFKG 38
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/79 (26%), Positives = 32/79 (40%)
Frame = +1
Query: 505 FRSAGACAPSSSKWSKQIHHHFASWAPDTVIHCDGEPIKRXEEEEALXAVGYDDIGGCRK 684
F G + SK++H AP+ + D E K E G+D + G
Sbjct: 675 FEKCGEDEEFLKRESKRLHRDLLRVAPEYIGGSDSESGKAFE--------GWDSVAGLEG 726
Query: 685 QLAQIKEMVELPLRHPSLF 741
+KE+V +PL +P F
Sbjct: 727 VTQCMKEVVLIPLLYPEFF 745
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 741
V +DD+GG + ++++ VE P++H + F
Sbjct: 283 VTWDDVGGLKDLKKKLQQAVEWPIKHSAAF 312
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 741
V +DDIG +KE+V LP + P LF
Sbjct: 732 VTFDDIGALENVKDTLKELVMLPFQWPELF 761
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 652 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF 741
V ++DIG + E+V LP+R P LF
Sbjct: 348 VKFEDIGALEDVKKALNELVILPMRRPELF 377
>At2g33255.1 68415.m04075 haloacid dehalogenase-like hydrolase
family protein contains InterPro accession IPR005834:
Haloacid dehalogenase-like hydrolase
Length = 224
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 466 FMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWAPD 588
F YR + +D ++ A +PS I HH SW+PD
Sbjct: 30 FAAMYRAVLGEDAYKRIKAESPSGI----DILHHIESWSPD 66
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,174,223
Number of Sequences: 28952
Number of extensions: 346370
Number of successful extensions: 983
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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