Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30645.Seq
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   119   2e-28
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   119   2e-28
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    30   0.20 
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    27   1.8  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    25   5.6  
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr...    25   5.6  
SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c...    25   7.4  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   7.4  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   9.8  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  119 bits (287), Expect = 2e-28
 Identities = 52/66 (78%), Positives = 61/66 (92%)
 Frame = +3

Query: 51  NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 230
           NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQL
Sbjct: 15  NHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQL 74

Query: 231 IKNGKK 248
           IKNGKK
Sbjct: 75  IKNGKK 80



 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 31/42 (73%), Positives = 36/42 (85%)
 Frame = +1

Query: 310 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 435
           ++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKKE+PR+
Sbjct: 102 LSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143



 Score = 34.7 bits (76), Expect = 0.009
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +2

Query: 242 KESDPFVPRDGCLNHIEENDE 304
           K+   FVP DGCLN ++ENDE
Sbjct: 79  KKVTAFVPHDGCLNFVDENDE 99


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  119 bits (287), Expect = 2e-28
 Identities = 52/66 (78%), Positives = 61/66 (92%)
 Frame = +3

Query: 51  NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 230
           NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQL
Sbjct: 15  NHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQL 74

Query: 231 IKNGKK 248
           IKNGKK
Sbjct: 75  IKNGKK 80



 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 31/42 (73%), Positives = 36/42 (85%)
 Frame = +1

Query: 310 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 435
           ++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKKE+PR+
Sbjct: 102 LSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143



 Score = 34.7 bits (76), Expect = 0.009
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +2

Query: 242 KESDPFVPRDGCLNHIEENDE 304
           K+   FVP DGCLN ++ENDE
Sbjct: 79  KKVTAFVPHDGCLNFVDENDE 99


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 135 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 230
           G+   +G+      V+ K+PNSA+RK  RV+L
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL 78


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = -1

Query: 176 TNFLEDDALCVRCTTERVSLPFRTHVGFLEFFVRPSLFTTVVHVLRAVRIPRGLPIW 6
           ++F +D++ C  CT   V+LP       LE F  PS    V H++ A  +P+ +P W
Sbjct: 302 SDFRQDESYCRICTQSCVTLP-----DILEAF--PSCHPPVDHLISA--LPQLMPRW 349


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 72  WADKEFKKAHMGTKWKANPFGGASHAKGIV 161
           W D EF   H   K+   PF   +H K  V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282


>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 432 SWSLLFLFVESEERHVGYFYHLKTNSGNVTD--GVTFTTESRH 310
           SW L+++ V S+E+  GY   L     N+ D  G+    ES H
Sbjct: 129 SWYLVYVGVSSKEQGKGYLRKLIEPIFNICDQEGLPIYLESSH 171


>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 4/19 (21%)
 Frame = -2

Query: 67  CSRRW----FTSYAPFVFL 23
           CS+RW    F S+ PFVFL
Sbjct: 331 CSKRWNEESFPSHCPFVFL 349


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 369 LKTNSGNVTDGVTFTTESRH*YSSFSSMWFRQPSR 265
           +K  +  VTD     T+S H Y   + M FR+  R
Sbjct: 670 IKALTSTVTDSTLVDTQSFHPYKVVTDMIFREDRR 704


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 269  DGCLNHIEENDEY*WR 316
            D C+ H+E N+E  W+
Sbjct: 1830 DSCVRHLENNEETDWK 1845


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,342,723
Number of Sequences: 5004
Number of extensions: 48844
Number of successful extensions: 98
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)