Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30645.Seq
         (551 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              126   9e-30
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)               85   5e-17
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)                29   3.3  
SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)                   28   4.4  
SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)                 27   7.7  
SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)         27   7.7  

>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score =  126 bits (305), Expect = 9e-30
 Identities = 57/66 (86%), Positives = 62/66 (93%)
 Frame = +3

Query: 51  NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 230
           +HRR+Q+W DK +KKAH+GT  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 14  SHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 73

Query: 231 IKNGKK 248
           IKNGKK
Sbjct: 74  IKNGKK 79



 Score = 37.5 bits (83), Expect = 0.007
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = +2

Query: 242 KESDPFVPRDGCLNHIEENDE 304
           K+   FVP DGCLN+IEENDE
Sbjct: 78  KKITAFVPNDGCLNYIEENDE 98



 Score = 37.5 bits (83), Expect = 0.007
 Identities = 13/17 (76%), Positives = 17/17 (100%)
 Frame = +1

Query: 310 VAGFGRKGHAVGDIPGV 360
           ++GFGR+GHAVGDIPG+
Sbjct: 101 ISGFGRRGHAVGDIPGI 117


>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 143

 Score = 84.6 bits (200), Expect = 5e-17
 Identities = 38/42 (90%), Positives = 42/42 (100%)
 Frame = +1

Query: 310 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 435
           ++GFGR+GHAVGDIPGVRFKVVKVANVSLLAL+KEKKERPRS
Sbjct: 102 ISGFGRRGHAVGDIPGVRFKVVKVANVSLLALFKEKKERPRS 143



 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 25/28 (89%), Positives = 27/28 (96%)
 Frame = +3

Query: 165 EKVGVEAKQPNSAIRKCVRVQLIKNGKK 248
           ++ GVEAKQPNSAIRKCVRVQLIKNGKK
Sbjct: 53  QEPGVEAKQPNSAIRKCVRVQLIKNGKK 80



 Score = 37.5 bits (83), Expect = 0.007
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = +2

Query: 242 KESDPFVPRDGCLNHIEENDE 304
           K+   FVP DGCLN+IEENDE
Sbjct: 79  KKITAFVPNDGCLNYIEENDE 99


>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 95  SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AA 193
           S HG  MEG P  W +S  G  P+ S C S +A
Sbjct: 85  SQHGTRMEGVPVCWYVSVWGLSPQVSQCDSVSA 117


>SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)
          Length = 623

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 401 LSTKRKRSDQDHRCTL**VTCCREARCL*VHKM*NPVHNKYCV 529
           +S+KR RS+  + C    V CC E     V K  +PV  K CV
Sbjct: 1   MSSKRTRSESSNLC----VVCCEEIEFSAVGKCDHPVCYKCCV 39


>SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 694

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 401 LSTKRKRSDQDHRCTL**VTCCREARCL*VHKM*NPVHNKYCV 529
           +S+KR RS+  + C    V CC E     V K  +PV  K CV
Sbjct: 1   MSSKRTRSESSNLC----VVCCEEIEFSAVGKCDHPVCYKCCV 39


>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
          Length = 943

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -2

Query: 163  RTMPFA*D-APPKGLAFHFVPMW-AFLN-SLSAHR 68
            R +PF+   APPKG  F  VP+W +F N S+  HR
Sbjct: 902  RKVPFSSVLAPPKGYRFLIVPLWRSFSNRSVFGHR 936


>SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)
          Length = 255

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 55  TVVNSDGRTKNSRKPTWVRNGRLTLSVVHLT 147
           T V    R  N++KP  +R+GR+T+S+  +T
Sbjct: 103 THVQFHHRDTNTKKPVHLRDGRVTVSLAAMT 133


>SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)
          Length = 302

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 150 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGK 245
           KG+ ++    + K+PNSA RKC  ++L  NGK
Sbjct: 230 KGVCVKVFIRKPKKPNSAQRKCALLKL-SNGK 260


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,131,228
Number of Sequences: 59808
Number of extensions: 403582
Number of successful extensions: 753
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)