Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30645.Seq
(551 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70684-7|CAA94601.1| 143|Caenorhabditis elegans Hypothetical pr... 132 2e-31
Z92838-1|CAB07406.1| 157|Caenorhabditis elegans Hypothetical pr... 36 0.026
Z81128-8|CAB03402.1| 811|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z70204-5|CAI46566.1| 379|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z70204-4|CAA94114.2| 437|Caenorhabditis elegans Hypothetical pr... 28 5.1
AY305832-1|AAR11977.1| 437|Caenorhabditis elegans nuclear recep... 28 5.1
AY305831-1|AAR11976.1| 437|Caenorhabditis elegans nuclear recep... 28 5.1
AF273775-1|AAG15124.1| 383|Caenorhabditis elegans nuclear recep... 28 5.1
AF273774-1|AAG15123.1| 433|Caenorhabditis elegans nuclear recep... 28 5.1
U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p... 27 9.0
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 27 9.0
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 27 9.0
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 27 9.0
>Z70684-7|CAA94601.1| 143|Caenorhabditis elegans Hypothetical
protein F28D1.7 protein.
Length = 143
Score = 132 bits (318), Expect = 2e-31
Identities = 57/65 (87%), Positives = 63/65 (96%)
Frame = +3
Query: 54 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 233
HR+EQRW DK +KKAH+GT+WK+NPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVRVQLI
Sbjct: 16 HRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLI 75
Query: 234 KNGKK 248
KNGKK
Sbjct: 76 KNGKK 80
Score = 78.6 bits (185), Expect = 3e-15
Identities = 35/42 (83%), Positives = 39/42 (92%)
Frame = +1
Query: 310 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 435
V+GFGR GHAVGDIPGVRFK+VKVAN SL+AL+K KKERPRS
Sbjct: 102 VSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143
Score = 35.9 bits (79), Expect = 0.019
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +2
Query: 242 KESDPFVPRDGCLNHIEENDE 304
K+ FVP DGCLN +EENDE
Sbjct: 79 KKITAFVPNDGCLNFVEENDE 99
>Z92838-1|CAB07406.1| 157|Caenorhabditis elegans Hypothetical
protein T03D8.2 protein.
Length = 157
Score = 35.5 bits (78), Expect = 0.026
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +3
Query: 135 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 230
G SH KGIVL+ V K+PNS RKC V+L
Sbjct: 72 GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL 103
>Z81128-8|CAB03402.1| 811|Caenorhabditis elegans Hypothetical
protein T23D8.9a protein.
Length = 811
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +2
Query: 254 PFVPRDGCLNHIEEN 298
PFVP+DG LN I+EN
Sbjct: 654 PFVPKDGVLNVIDEN 668
>Z70204-5|CAI46566.1| 379|Caenorhabditis elegans Hypothetical
protein C11G6.4b protein.
Length = 379
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 530 VHNIYYVQDFTFYELINNALPDSRXLITMYT 438
V N+Y V++ TFYEL++ L DS T T
Sbjct: 301 VFNVYSVEE-TFYELVSGRLSDSFFQTTQLT 330
>Z70204-4|CAA94114.2| 437|Caenorhabditis elegans Hypothetical
protein C11G6.4a protein.
Length = 437
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 530 VHNIYYVQDFTFYELINNALPDSRXLITMYT 438
V N+Y V++ TFYEL++ L DS T T
Sbjct: 359 VFNVYSVEE-TFYELVSGRLSDSFFQTTQLT 388
>AY305832-1|AAR11977.1| 437|Caenorhabditis elegans nuclear receptor
NHR-28 protein.
Length = 437
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 530 VHNIYYVQDFTFYELINNALPDSRXLITMYT 438
V N+Y V++ TFYEL++ L DS T T
Sbjct: 359 VFNVYSVEE-TFYELVSGRLSDSFFQTTQLT 388
>AY305831-1|AAR11976.1| 437|Caenorhabditis elegans nuclear receptor
NHR-28 protein.
Length = 437
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 530 VHNIYYVQDFTFYELINNALPDSRXLITMYT 438
V N+Y V++ TFYEL++ L DS T T
Sbjct: 359 VFNVYSVEE-TFYELVSGRLSDSFFQTTQLT 388
>AF273775-1|AAG15124.1| 383|Caenorhabditis elegans nuclear receptor
NHR-28 protein.
Length = 383
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 530 VHNIYYVQDFTFYELINNALPDSRXLITMYT 438
V N+Y V++ TFYEL++ L DS T T
Sbjct: 305 VFNVYSVEE-TFYELVSGRLSDSFFQTTQLT 334
>AF273774-1|AAG15123.1| 433|Caenorhabditis elegans nuclear receptor
NHR-28 protein.
Length = 433
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 530 VHNIYYVQDFTFYELINNALPDSRXLITMYT 438
V N+Y V++ TFYEL++ L DS T T
Sbjct: 355 VFNVYSVEE-TFYELVSGRLSDSFFQTTQLT 384
>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
protein 2, isoform a protein.
Length = 1538
Score = 27.1 bits (57), Expect = 9.0
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Frame = -2
Query: 193 GCLASTPTFSRTMPFA*DAPPKGLAFHF-VPMWAFLNSL---SAHRCSRRWFTS---YAP 35
GC S F + + K F++ V FLN+ S H +WFT YA
Sbjct: 366 GCCHSVGKFIKQLRIQIRIMVKTQIFYWSVITLVFLNTCCVASEHYGQPQWFTDFLKYAE 425
Query: 34 FVFLGVY 14
FVFLG++
Sbjct: 426 FVFLGIF 432
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 27.1 bits (57), Expect = 9.0
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Frame = -2
Query: 193 GCLASTPTFSRTMPFA*DAPPKGLAFHF-VPMWAFLNSL---SAHRCSRRWFTS---YAP 35
GC S F + + K F++ V FLN+ S H +WFT YA
Sbjct: 366 GCCHSVGKFIKQLRIQIRIMVKTQIFYWSVITLVFLNTCCVASEHYGQPQWFTDFLKYAE 425
Query: 34 FVFLGVY 14
FVFLG++
Sbjct: 426 FVFLGIF 432
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 27.1 bits (57), Expect = 9.0
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Frame = -2
Query: 193 GCLASTPTFSRTMPFA*DAPPKGLAFHF-VPMWAFLNSL---SAHRCSRRWFTS---YAP 35
GC S F + + K F++ V FLN+ S H +WFT YA
Sbjct: 500 GCCHSVGKFIKQLRIQIRIMVKTQIFYWSVITLVFLNTCCVASEHYGQPQWFTDFLKYAE 559
Query: 34 FVFLGVY 14
FVFLG++
Sbjct: 560 FVFLGIF 566
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 27.1 bits (57), Expect = 9.0
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Frame = -2
Query: 193 GCLASTPTFSRTMPFA*DAPPKGLAFHF-VPMWAFLNSL---SAHRCSRRWFTS---YAP 35
GC S F + + K F++ V FLN+ S H +WFT YA
Sbjct: 500 GCCHSVGKFIKQLRIQIRIMVKTQIFYWSVITLVFLNTCCVASEHYGQPQWFTDFLKYAE 559
Query: 34 FVFLGVY 14
FVFLG++
Sbjct: 560 FVFLGIF 566
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,196,810
Number of Sequences: 27780
Number of extensions: 284337
Number of successful extensions: 573
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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