Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30645.Seq
         (551 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo...   112   2e-25
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi...   103   8e-23
At1g32960.1 68414.m04059 subtilase family protein contains simil...    28   4.8  
At1g32940.1 68414.m04057 subtilase family protein contains simil...    28   4.8  
At3g63320.1 68416.m07123 protein phosphatase 2C-related / PP2C-r...    27   6.3  

>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
           ribosomal protein S23, Fragaria x ananassa, PIR:S56673
          Length = 142

 Score =  112 bits (269), Expect = 2e-25
 Identities = 49/64 (76%), Positives = 57/64 (89%)
 Frame = +3

Query: 57  RREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 236
           R  QRWADK++KK+H+G +WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIK
Sbjct: 17  RINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 75

Query: 237 NGKK 248
           NGKK
Sbjct: 76  NGKK 79



 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 37/42 (88%), Positives = 41/42 (97%)
 Frame = +1

Query: 310 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 435
           +AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 101 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142



 Score = 37.1 bits (82), Expect = 0.008
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = +2

Query: 242 KESDPFVPRDGCLNHIEENDE 304
           K+   FVP DGCLN+IEENDE
Sbjct: 78  KKIAAFVPNDGCLNYIEENDE 98


>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
           to 40S ribosomal protein S23 (S12) GB:P46297 from
           [Fragaria x ananassa]
          Length = 142

 Score =  103 bits (247), Expect = 8e-23
 Identities = 47/64 (73%), Positives = 54/64 (84%)
 Frame = +3

Query: 57  RREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 236
           R  QRWADK +KK++ G +WK  PF  +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIK
Sbjct: 17  RITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 75

Query: 237 NGKK 248
           NGKK
Sbjct: 76  NGKK 79



 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 37/42 (88%), Positives = 41/42 (97%)
 Frame = +1

Query: 310 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 435
           +AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 101 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142



 Score = 37.1 bits (82), Expect = 0.008
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = +2

Query: 242 KESDPFVPRDGCLNHIEENDE 304
           K+   FVP DGCLN+IEENDE
Sbjct: 78  KKIAAFVPNDGCLNYIEENDE 98


>At1g32960.1 68414.m04059 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
          Length = 777

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 72  WADKEFKKAHMGTKWKANPFGGASHAKG 155
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 575 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 602


>At1g32940.1 68414.m04057 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 774

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 72  WADKEFKKAHMGTKWKANPFGGASHAKG 155
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 572 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 599


>At3g63320.1 68416.m07123 protein phosphatase 2C-related /
           PP2C-related protein phosphatase 2C - Rattus norvegicus,
           EMBL:AF095927
          Length = 423

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 539 FFAVHNIYYVQDFTFYELINNALPDSRXLITMYTYDLGRSFF 414
           +FA+H IY++ D TF + +   LP+S     M+ YDL    F
Sbjct: 92  YFALH-IYFLLDATFSKELTGKLPNS----LMHLYDLDSQRF 128


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,475,966
Number of Sequences: 28952
Number of extensions: 266874
Number of successful extensions: 617
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)