Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30644.Seq
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467...    29   3.0  
09_06_0061 + 20596360-20596618,20597039-20597158,20597329-205974...    29   5.2  
09_02_0229 - 6062825-6064899,6064943-6065432,6065479-6065956,606...    29   5.2  
03_06_0124 - 31830797-31831371,31831510-31831532,31832143-318322...    28   6.9  
11_01_0599 - 4777964-4778842                                           28   9.1  

>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
            29646843-29646899,29647007-29647094,29647304-29647374,
            29647457-29647585,29647662-29648051,29648332-29648517,
            29648612-29648692,29648787-29648879,29648966-29649086,
            29649200-29649409,29649560-29649727,29649898-29650065,
            29650144-29650311,29650453-29650620,29650738-29650905,
            29651023-29651190,29651567-29651734,29652391-29652558,
            29652645-29652812,29655720-29655887,29656069-29656236,
            29656391-29656558,29656670-29656837,29657525-29657664,
            29658033-29658221,29658243-29658315,29658379-29658452,
            29658535-29658654,29658718-29658738,29658794-29658999,
            29659094-29659271,29660066-29660126,29660232-29660341,
            29660427-29660558,29661091-29661258,29661339-29661465,
            29661794-29661831,29663321-29663422,29663505-29663562,
            29663659-29663760,29663844-29663990,29664098-29664234,
            29664313-29664462,29664561-29664720,29665820-29665878,
            29666025-29666181,29666288-29666433,29666523-29666666,
            29667242-29667376
          Length = 2344

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -3

Query: 200  AEQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEK 72
            A    F   +ED EK+I  L+  + + +  ++KLQS + TIEK
Sbjct: 1076 ARNEAFASKLEDAEKQIDLLQETVQRFEEAITKLQS-SVTIEK 1117


>09_06_0061 +
           20596360-20596618,20597039-20597158,20597329-20597462,
           20597578-20597730,20597816-20597927,20598022-20598352,
           20598524-20598737,20598842-20598931,20599669-20599924,
           20600029-20600141,20600733-20600831,20600915-20600980,
           20601018-20601167,20601278-20601368,20601710-20601749,
           20603888-20605247,20605478-20605507,20605834-20605885,
           20606264-20606397,20606513-20606665,20607089-20607202
          Length = 1356

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 544 SHSFILKLPEHPAKILRELLKSGGEFEKSSYHTD--WIMICGRGEVRLGS 687
           S SF+  L EH +K+    L +GG+ E +  H    W+ + GR E +  S
Sbjct: 708 SKSFVSMLREHCSKVHIRELDAGGKKEMNIEHCTEFWVEVRGRKEFKTWS 757


>09_02_0229 - 6062825-6064899,6064943-6065432,6065479-6065956,
            6066333-6066382,6068917-6069172,6069358-6069503
          Length = 1164

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/65 (26%), Positives = 25/65 (38%)
 Frame = +3

Query: 81   CSCATLQLGKVSLSFKKCCFQKLNTLFFVFYSQFKVPLLXXXXXXXXXXXXLPGHKIPKK 260
            C    L L      +KK  F+++NT+  +F   F  P L            LPG  I   
Sbjct: 842  CFLRHLILSCTMPQYKKLSFEEINTIEAIFEGLFPPPSLEKLQIINFCGQSLPGWLISSS 901

Query: 261  IRPNI 275
            +  N+
Sbjct: 902  LETNL 906


>03_06_0124 -
           31830797-31831371,31831510-31831532,31832143-31832271,
           31833287-31834842
          Length = 760

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 553 FILKLPEHPAKILRELLKSGGEFEKSSYHTDW 648
           +ILK  E+P +++RE L+S      +S  + W
Sbjct: 664 YILKALENPLRVVREELQSNSSLTSTSSRSSW 695


>11_01_0599 - 4777964-4778842
          Length = 292

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = -3

Query: 158 KRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIH 42
           + +K LEA + +T+ ++++L+ R + +E     LN ++H
Sbjct: 130 RSVKKLEAEVAETRQEVAQLKKRGSEMEMAVASLNAQLH 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,853,009
Number of Sequences: 37544
Number of extensions: 266527
Number of successful extensions: 664
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)