Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30644.Seq
(748 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 32 0.50
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 32 0.50
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 32 0.50
Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical p... 29 2.6
Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical p... 29 2.6
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p... 28 6.1
AF125952-5|AAD14697.2| 327|Caenorhabditis elegans Serpentine re... 28 6.1
AC006722-11|AAW88389.1| 327|Caenorhabditis elegans Serpentine r... 28 6.1
U64848-1|AAB04881.2| 481|Caenorhabditis elegans Hypothetical pr... 28 8.1
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c... 28 8.1
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 31.9 bits (69), Expect = 0.50
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = -3
Query: 206 ITAEQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKI 69
+ +E RD+K + D R+ L+ L T+ ++++ R ++EK+
Sbjct: 1924 VRSEVRDYKQRVHDVNNRVSELQRQLQDANTEKNRVEDRFLSVEKV 1969
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 31.9 bits (69), Expect = 0.50
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = -3
Query: 206 ITAEQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKI 69
+ +E RD+K + D R+ L+ L T+ ++++ R ++EK+
Sbjct: 1997 VRSEVRDYKQRVHDVNNRVSELQRQLQDANTEKNRVEDRFLSVEKV 2042
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 31.9 bits (69), Expect = 0.50
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = -3
Query: 206 ITAEQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKI 69
+ +E RD+K + D R+ L+ L T+ ++++ R ++EK+
Sbjct: 1997 VRSEVRDYKQRVHDVNNRVSELQRQLQDANTEKNRVEDRFLSVEKV 2042
>Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical
protein C38D9.3 protein.
Length = 1496
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/66 (25%), Positives = 35/66 (53%)
Frame = -3
Query: 212 DFITAEQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIP 33
D E+R + ++E + K LEAA +Q ++ KLQ E ++++ + +++
Sbjct: 251 DLFETEKRS--IIQSEREDQEKNLEAAKKASQREVEKLQQEKMAAENLAQESSEKLNVAK 308
Query: 32 ESRNEN 15
E+ NE+
Sbjct: 309 ETTNES 314
>Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = -3
Query: 197 EQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESRNE 18
EQ + KL D EK++K + L+K + + +LQSR K ++ E ++ E +N
Sbjct: 267 EQDENKLRA-DLEKKLKTSQEKLVKYEGKIEELQSRLNKKRKELEEVQAENRKLLEDKNT 325
Query: 17 NVLDL 3
+ +L
Sbjct: 326 HDFEL 330
>Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = -3
Query: 197 EQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESRNE 18
EQ + KL D EK++K + L+K + + +LQSR K ++ E ++ E +N
Sbjct: 267 EQDENKLRA-DLEKKLKTSQEKLVKYEGKIEELQSRLNKKRKELEEVQAENRKLLEDKNT 325
Query: 17 NVLDL 3
+ +L
Sbjct: 326 HDFEL 330
>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 622 EKSSYHTDWIMICGRGEVRLGSLVDACQN*LD 717
EK S H W+ IC GE +L S V N LD
Sbjct: 1132 EKQSEHELWVSICDGGEPQLCSNVIVIVNVLD 1163
>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 622 EKSSYHTDWIMICGRGEVRLGSLVDACQN*LD 717
EK S H W+ IC GE +L S V N LD
Sbjct: 1132 EKQSEHELWVSICDGGEPQLCSNVIVIVNVLD 1163
>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
protein F25F2.2 protein.
Length = 4307
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 622 EKSSYHTDWIMICGRGEVRLGSLVDACQN*LD 717
EK S H W+ IC GE +L S V N LD
Sbjct: 1132 EKQSEHELWVSICDGGEPQLCSNVIVIVNVLD 1163
>AF125952-5|AAD14697.2| 327|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 61 protein.
Length = 327
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 166 SSIANLKSLCSAVMKSVVLKGLSYQVIKSLKKYVLIFI 279
SSI+ S + VM +++KGL+ QV+ L YV I I
Sbjct: 218 SSISTASSKSTRVMSELLVKGLNLQVLLPLICYVPISI 255
>AC006722-11|AAW88389.1| 327|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 75 protein.
Length = 327
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 166 SSIANLKSLCSAVMKSVVLKGLSYQVIKSLKKYVLIFI 279
SSI+ S + VM +++KGL+ QV+ L YV I I
Sbjct: 218 SSISTASSKSTRVMSELLVKGLNLQVLLPLICYVPISI 255
>U64848-1|AAB04881.2| 481|Caenorhabditis elegans Hypothetical
protein C50E3.5 protein.
Length = 481
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/82 (23%), Positives = 42/82 (51%)
Frame = +1
Query: 70 IFSIVAVRLCSLERSV*VLRSAASRNLIRFSLSSIANLKSLCSAVMKSVVLKGLSYQVIK 249
I S +++ + SL++S + S + ++ F+ S + L + + SVV+ S+ K
Sbjct: 100 IKSALSILMRSLQKSSSMTTSLSDIDVTLFNFHSTKFAERLLNRNVSSVVIVESSHVFSK 159
Query: 250 SLKKYVLIFININFTTLNVFYL 315
+ KK+ F N++ +++ L
Sbjct: 160 NAKKFASEFSNVSAYRADIYTL 181
>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 1 protein.
Length = 1475
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/53 (20%), Positives = 30/53 (56%)
Frame = -3
Query: 173 IEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESRNEN 15
I D E +++ + T ++L++ ATI++++ ++ +++ E+ +EN
Sbjct: 518 ISDLENQLEAAKLESGSTSEPNAQLEASQATIQELTSEMKMQLEEVKRQSDEN 570
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,665,933
Number of Sequences: 27780
Number of extensions: 266722
Number of successful extensions: 606
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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