Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30643.Seq
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)                 78   7e-15
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             32   0.57 
SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)                    31   1.3  
SB_13066| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_51105| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)                   29   5.3  
SB_19407| Best HMM Match : SURF6 (HMM E-Value=0.43)                    28   9.2  
SB_36147| Best HMM Match : Keratin_B2 (HMM E-Value=1.7)                28   9.2  

>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
          Length = 203

 Score = 78.2 bits (184), Expect = 7e-15
 Identities = 37/71 (52%), Positives = 47/71 (66%)
 Frame = +1

Query: 1   YTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVL 180
           YTYP++FRA K LIAA+YSGT ++V P F FG+ N + +FLKKFP GKVPAFE+      
Sbjct: 7   YTYPDSFRAQKILIAAEYSGTKIEV-PAFTFGKDNHTAEFLKKFPLGKVPAFETKTANAC 65

Query: 181 LTESNAIAYYV 213
                 +  YV
Sbjct: 66  TRAMPLLTTYV 76



 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 27/61 (44%), Positives = 44/61 (72%)
 Frame = +3

Query: 267 WASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERI 446
           + +++D ELLPA+  WVFP  G+MQ++KQ+ ++A  D+   + +L+  LL +TFLV ER+
Sbjct: 75  YVNFADQELLPAAATWVFPTYGMMQYHKQSTDKAMEDVKKYMTMLNDVLLMKTFLVGERV 134

Query: 447 T 449
           T
Sbjct: 135 T 135


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +2

Query: 314  GLPLPWYHAIQQTEC*TCKV*PTGRLKSTGRTSSHTHLPCYRENHLPMSLSSVHCCMLS 490
            GL +P+  A  + EC TC   P G +   G   S    PCYR  + P++ +++ C +++
Sbjct: 3289 GLVIPYEGARSEAECQTC---PAGFICKAG---SSIPEPCYRGYYCPLNETAIPCPVMT 3341


>SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)
          Length = 505

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +1

Query: 16  NFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESN 195
           N   +K +   Q   +  K+ P  V GE N   + +KK     +P      GK +  + +
Sbjct: 105 NIGKFKMVWIDQIDESTKKLKPKMVAGEDNGFVNAIKKVSLEDIPEGNGPSGKAIREKRS 164

Query: 196 AIAYYVANESL 228
            I   + N+SL
Sbjct: 165 IIVNDIENDSL 175


>SB_13066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 200 SLTTLPMKVSAEEIWLPKPCLAVGI 274
           +LTTLP  ++ E++W+   C  +GI
Sbjct: 645 ALTTLPTPITVEQLWIKDVCNEIGI 669


>SB_51105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/85 (20%), Positives = 40/85 (47%)
 Frame = -1

Query: 364 RSTFCLLNCMIPR*GKTQAQEAGSSSLSDHDAHCQTRLG*PDLLRGDFHWQRSKRWHCFQ 185
           R+ +C+L+ M+P   +   + A +   + H A  Q  L   + +    +W+++   +   
Sbjct: 33  RAAYCILSPMVPGGERKNGRSASTEMAATHRAPKQWSLSKTETITSFENWKQN-LMYTLS 91

Query: 184 LEAPFHRHFRMQALFRQETSSRSLR 110
           L+  F  +    A ++++T +  LR
Sbjct: 92  LDTNFSTYLADGATWKRKTKTEPLR 116


>SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)
          Length = 364

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 145 LFRQETSSRSLRTCWSRQIRNSVLLSHQSRNIVRRSTLYK 26
           +FR +  + +     S ++ N V +SHQSR IV   T+ K
Sbjct: 102 VFRSKQQAPNKAVGRSDEVTNEVAVSHQSRRIVESETVRK 141


>SB_19407| Best HMM Match : SURF6 (HMM E-Value=0.43)
          Length = 443

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 673 KKIRSVKRKSNPRRRXEVVPDL 738
           KKI+  K+KSNPRR    VP L
Sbjct: 404 KKIKKEKKKSNPRRSKCSVPGL 425


>SB_36147| Best HMM Match : Keratin_B2 (HMM E-Value=1.7)
          Length = 533

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +3

Query: 405 GHLLTRTFLVTERITCRCHCLQY---TAACFPARARPDV 512
           G  L+R  +     TC C C  Y    + CFP+RA  +V
Sbjct: 138 GVFLSRAHVDVSPNTCSCRCFPYHVLMSMCFPSRAHFNV 176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,112,887
Number of Sequences: 59808
Number of extensions: 529688
Number of successful extensions: 1542
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1539
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)