Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30642.Seq
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 128 6e-31
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 83 5e-17
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 82 9e-17
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 80 3e-16
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 76 6e-15
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 74 2e-14
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 62 7e-11
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 62 1e-10
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 37 0.003
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p... 27 2.0
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 27 2.6
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo... 27 3.4
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 27 3.4
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy... 27 3.4
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy... 26 6.0
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 25 7.9
SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family... 25 7.9
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 128 bits (310), Expect = 6e-31
Identities = 62/87 (71%), Positives = 77/87 (88%)
Frame = +3
Query: 249 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
+ +L+VEHPA KVLVELAQ QD+EVGDGTTSVVIIAAELL+ A+ELVK KIHPT+II+GY
Sbjct: 67 LSLLDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGY 126
Query: 429 RLACKEAVKYIQDNLTVTVESLGRPSL 509
RLA +EAVK++ D L+ +V+SLG+ SL
Sbjct: 127 RLAIREAVKFMTDVLSCSVDSLGKESL 153
Score = 81.0 bits (191), Expect = 1e-16
Identities = 36/54 (66%), Positives = 44/54 (81%)
Frame = +2
Query: 509 INTAKTTMSSKLIGADADFFSEMVVDAAQAIKTMNPRGNTIYPIKAINILKAHG 670
IN AKT+MSSK+IG D+DFFS M VDA ++KT N +G T YP+KA+NILKAHG
Sbjct: 154 INVAKTSMSSKIIGNDSDFFSTMAVDAMLSVKTSNSKGETRYPVKAVNILKAHG 207
Score = 74.1 bits (174), Expect = 2e-14
Identities = 35/36 (97%), Positives = 36/36 (100%)
Frame = +1
Query: 145 AIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATIL 252
AIAN+VKSSLGPVGLDKMLVDDIGDVTVTNDGATIL
Sbjct: 32 AIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATIL 67
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 82.6 bits (195), Expect = 5e-17
Identities = 37/68 (54%), Positives = 53/68 (77%)
Frame = +3
Query: 249 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
+K + +++ AAKVLV ++++QD+EVGDGTTSV + AAELL+ A+ +V KIHP II GY
Sbjct: 67 LKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGY 126
Query: 429 RLACKEAV 452
R+A K A+
Sbjct: 127 RIATKTAI 134
Score = 50.8 bits (116), Expect = 2e-07
Identities = 24/40 (60%), Positives = 32/40 (80%), Gaps = 1/40 (2%)
Frame = +1
Query: 139 AAAIANIVKSSLGPVGLDKML-VDDIGDVTVTNDGATILK 255
A A+ ++VKS+LGP G+DK+L + GD+ VTNDGATILK
Sbjct: 29 AIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILK 68
Score = 31.5 bits (68), Expect = 0.12
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +2
Query: 512 NTAKTTMSSKLIGADADFFSEMVVDAAQAIK 604
N A+TT+SSK++ + + F+++ VDA +K
Sbjct: 157 NIARTTLSSKILSQNKNHFAQLAVDAVLRLK 187
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 81.8 bits (193), Expect = 9e-17
Identities = 39/79 (49%), Positives = 57/79 (72%)
Frame = +3
Query: 249 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
++ +EV HPAAK ++ELA+ QDEEVGDGTTSV+I+A E+L A L+ KIHP +I +
Sbjct: 65 LREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSF 124
Query: 429 RLACKEAVKYIQDNLTVTV 485
+ A ++A+ I D +T+ V
Sbjct: 125 KQALEDALSII-DEITLPV 142
Score = 44.0 bits (99), Expect = 2e-05
Identities = 18/39 (46%), Positives = 29/39 (74%)
Frame = +1
Query: 139 AAAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 255
A A+A+++++ LGP + KML+D +G V +TNDG IL+
Sbjct: 28 AKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILR 66
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 80.2 bits (189), Expect = 3e-16
Identities = 35/71 (49%), Positives = 51/71 (71%)
Frame = +3
Query: 249 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
+ +EVEH AK+LV+L++ QD+E+GDGTT VV++A LL+ A+ L+ IHP I GY
Sbjct: 80 LDQMEVEHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGY 139
Query: 429 RLACKEAVKYI 461
AC+ AVK++
Sbjct: 140 EKACQVAVKHL 150
Score = 55.2 bits (127), Expect = 9e-09
Identities = 24/35 (68%), Positives = 31/35 (88%)
Frame = +1
Query: 148 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATIL 252
+ANIV++SLGP GLDK+L+ G++TVTNDGATIL
Sbjct: 46 VANIVRTSLGPRGLDKILISPDGEITVTNDGATIL 80
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 515 TAKTTMSSKLIGADADFFSEMVVDAAQAI 601
+AKT++ SK++ D F+ + VDA ++
Sbjct: 170 SAKTSLGSKVVSKAHDHFANIAVDAVLSV 198
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 75.8 bits (178), Expect = 6e-15
Identities = 37/73 (50%), Positives = 51/73 (69%)
Frame = +3
Query: 249 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
+K+L++ HPAAK LV++A+ QD EVGDGTTSVV+ A ELL+ A V+ + II GY
Sbjct: 70 MKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGY 129
Query: 429 RLACKEAVKYIQD 467
R A + AV I++
Sbjct: 130 RKAAQLAVNKIKE 142
Score = 51.6 bits (118), Expect = 1e-07
Identities = 19/37 (51%), Positives = 32/37 (86%)
Frame = +1
Query: 145 AIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 255
A+ + ++++LGP+G DK++VDD G+V ++NDGATI+K
Sbjct: 35 AVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMK 71
Score = 32.3 bits (70), Expect = 0.069
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +2
Query: 518 AKTTMSSKLIGADADFFSEMVVDAAQAIKTMNPRGNTI 631
A T M+SKLI +++ FF++MVVDA + + N I
Sbjct: 163 ASTAMNSKLIRSNSTFFTKMVVDAVLTLDQEDLNENMI 200
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 74.1 bits (174), Expect = 2e-14
Identities = 40/87 (45%), Positives = 56/87 (64%)
Frame = +3
Query: 249 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
+K L V HPAAK+LV+L+ QD E GDGTTSVVI+A +L A++L+K IHPT I +
Sbjct: 65 LKHLSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESF 124
Query: 429 RLACKEAVKYIQDNLTVTVESLGRPSL 509
+ A V +++N + +E R SL
Sbjct: 125 QRAAGFTVDCMKEN-ALAIELSDRESL 150
Score = 49.2 bits (112), Expect = 6e-07
Identities = 21/39 (53%), Positives = 31/39 (79%)
Frame = +1
Query: 139 AAAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 255
A ++A+ +++SLGP G+DKM+ G+V +TNDGATILK
Sbjct: 28 ARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILK 66
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 62.1 bits (144), Expect = 7e-11
Identities = 27/82 (32%), Positives = 48/82 (58%)
Frame = +3
Query: 249 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
I+ LEV HPAAK++V+ Q Q+ E+GD VV+ ELL A+ +++ + P I GY
Sbjct: 72 IRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGY 131
Query: 429 RLACKEAVKYIQDNLTVTVESL 494
+A ++ +++ +E++
Sbjct: 132 EMALSHTMEVLEEICADKIETV 153
Score = 35.1 bits (77), Expect = 0.010
Identities = 14/36 (38%), Positives = 26/36 (72%)
Frame = +1
Query: 148 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 255
++ I ++SLGP G +K++V+ + +TND ATI++
Sbjct: 38 LSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATIIR 73
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 61.7 bits (143), Expect = 1e-10
Identities = 25/68 (36%), Positives = 44/68 (64%)
Frame = +3
Query: 258 LEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLA 437
+++++P A + + A QD+ GDGTTSV ++ ELLK A+ ++ +HP+ I G+ LA
Sbjct: 65 MQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLA 124
Query: 438 CKEAVKYI 461
EA+ ++
Sbjct: 125 KNEALTFL 132
Score = 40.7 bits (91), Expect = 2e-04
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +1
Query: 139 AAAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATIL 252
A + +++KS+LGP G KMLVD G + +T DG +L
Sbjct: 25 AIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLL 62
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 503 VSINTAKTTMSSKLIGADADFFSEMVVDAAQAIK 604
V +N AKT++S+K+ + + VVDA I+
Sbjct: 145 VLLNVAKTSLSTKISSKVVESLAPAVVDAILTIR 178
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 36.7 bits (81), Expect = 0.003
Identities = 17/68 (25%), Positives = 34/68 (50%)
Frame = +3
Query: 267 EHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKE 446
E+ A+++ ++A +E GDGTT+ ++ + V +P + G +LA
Sbjct: 98 ENLGARLVQDVASKTNEVAGDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQLAVDN 157
Query: 447 AVKYIQDN 470
V+++Q N
Sbjct: 158 VVEFLQAN 165
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 148 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 255
+A V +LGP G + ++ G +T DG T+ +
Sbjct: 54 LARAVSVTLGPKGRNVLIDQPFGSPKITKDGVTVAR 89
>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 232
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 393 TKIHPTSIISGYRLACKEAVKYIQDNLTVTVESLGRPSLSTQ 518
T +HP I+ +R ++ V Y+Q +L+ + R LS Q
Sbjct: 82 THVHPLEIMMKHRSLVEKLVSYVQGDLSGLIFDEARNCLSQQ 123
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 336 TSVVIIAAELLKNADELVKTKIHPTSIISGY 428
T++++++ LL E + TK+HP+ +S Y
Sbjct: 302 TNLIVVSVALLHQWAEELSTKVHPSKKLSVY 332
>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 572
Score = 26.6 bits (56), Expect = 3.4
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = +2
Query: 167 APLGQLVWIRCWLTILGM 220
+PL +++W+ CW +LG+
Sbjct: 149 SPLSKMMWVFCWRWLLGV 166
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 3.4
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +1
Query: 568 LGDGCRCCTGNQNNEPQRKYYIP 636
+ +GC+C G Q+ Y+IP
Sbjct: 364 INEGCKCVVGGLPRSEQKGYFIP 386
>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 26.6 bits (56), Expect = 3.4
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = +2
Query: 167 APLGQLVWIRCWLTILGM 220
+PL +++W+ CW +LG+
Sbjct: 149 SPLSKMMWVFCWRWLLGV 166
>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 170 PLGQLVWIRCWLTILGM 220
PLG+++WI W +LG+
Sbjct: 145 PLGKMMWIFAWRWLLGL 161
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +3
Query: 300 AQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNLT 476
A L DE G V+++A + K LV I+P ++ A +K DN+T
Sbjct: 192 ASLLDEGTAAGEAMVMLMANDKKKRKTFLVDKNIYPNTLSVLRTRASGFGIKIELDNIT 250
>SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -3
Query: 222 NIPNIVNQHLIQTNWPKGALYYVCYSRCWPLHFVFSLGLRRILSL 88
N+ I+ Q+L TN G YY Y+R PL F L ++++ L
Sbjct: 235 NLAKIIIQNLY-TN-KSGRFYYPFYARFMPLLRFFPLPIQKLARL 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,837,971
Number of Sequences: 5004
Number of extensions: 55839
Number of successful extensions: 167
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -