Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30641.Seq
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449...    48   1e-05
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490...    47   2e-05
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560...    43   3e-04
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662...    42   6e-04
02_05_0261 + 27243898-27243938,27244068-27244157,27244293-272443...    42   6e-04
04_04_0814 + 28266590-28266615,28266780-28266860,28266986-282670...    40   0.003
01_06_0175 + 27229878-27230056,27231102-27231159,27231230-272312...    39   0.005
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217           38   0.012
03_02_0522 + 9103357-9103437,9103538-9103592,9103687-9103739,910...    29   3.2  
04_01_0239 - 3126367-3127230,3127342-3128247                           29   5.7  
01_02_0078 - 10894871-10895841,10897268-10898426                       29   5.7  
12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561     28   9.9  

>01_01_0605 +
           4497308-4497472,4497719-4497904,4498898-4499003,
           4499062-4499216,4499341-4499424,4499498-4499589,
           4499729-4499837,4499944-4500030,4500153-4500245,
           4501144-4501341,4501481-4501632,4501724-4501874,
           4501975-4502073,4502159-4502326,4502624-4502702,
           4502870-4503000
          Length = 684

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
 Frame = +3

Query: 84  KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM--YDKSEWEEKAQ 257
           K  + PKR M+ ++ +  + R  +K++NP L  TEIAKK GE+W+ M   +K  + +++Q
Sbjct: 594 KDPNAPKRAMTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKMTGEEKQPYIQQSQ 653

Query: 258 KPK 266
             K
Sbjct: 654 VDK 656


>05_01_0562 +
           4907937-4907990,4908890-4909075,4909180-4909285,
           4909377-4909513,4909989-4910072,4910157-4910248,
           4910358-4910466,4910554-4910640,4910737-4910829,
           4911384-4911581,4911659-4911810,4911910-4912060,
           4912174-4912272,4912362-4912535,4912680-4912758,
           4912858-4912979
          Length = 640

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
 Frame = +3

Query: 84  KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM--YDKSEWEEKAQ 257
           K  + PKR ++ ++ +  + R+ +K+ NP L  TEIAKK GE W+ M   +K  + E++Q
Sbjct: 553 KDPNAPKRAIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKMTAEEKQPYVEQSQ 612

Query: 258 KPK 266
             K
Sbjct: 613 VDK 615


>09_06_0203 +
           21555747-21555805,21555862-21555939,21556034-21556091,
           21556191-21556235,21556514-21556549,21556855-21556935,
           21557016-21557087,21557184-21557195
          Length = 146

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = +3

Query: 84  KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSMYD 230
           K  +KPKRP SA+ +++   R   K+ +P +K V+ I K  G+ W+SM D
Sbjct: 30  KDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKWKSMTD 79


>08_01_0008 -
           65366-65497,65588-65759,65846-65972,66058-66140,
           66232-66329
          Length = 203

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
 Frame = +3

Query: 96  KPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM--YDKSEWEEKAQKPK 266
           K KRP +A+ L+++  R + K ++P  K V+ +AK+ GE W+SM   DK  + +KA + K
Sbjct: 91  KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDEDKKPYLDKAAELK 150


>02_05_0261 +
           27243898-27243938,27244068-27244157,27244293-27244350,
           27244441-27244485,27244778-27244855,27244940-27245041,
           27245150-27245173
          Length = 145

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
 Frame = +3

Query: 96  KPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM--YDKSEWEEKAQKPK 266
           KPKRP SA+ ++++  R + +  +P  K V  ++K AGE WR+M   +K+ + +KA + K
Sbjct: 32  KPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMSEQEKAPYVDKAGQKK 91

Query: 267 NN 272
            +
Sbjct: 92  QD 93


>04_04_0814 +
           28266590-28266615,28266780-28266860,28266986-28267043,
           28267143-28267187,28268653-28268721,28268821-28268931,
           28269038-28269046
          Length = 132

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 96  KPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSMYDKSEWEEKAQKP 263
           KPKR ++ +  +L   R +  + +P  K V  + K AGE WR+M D+ + +   +KP
Sbjct: 24  KPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSDEEKAQYGGKKP 80


>01_06_0175 +
           27229878-27230056,27231102-27231159,27231230-27231274,
           27232711-27232791,27232884-27232922
          Length = 133

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +3

Query: 96  KPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM 224
           +PK+P +A+  ++   R   K++NP +K + E+ K  GE W +M
Sbjct: 48  RPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTM 91


>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
          Length = 504

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = +3

Query: 102 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM--YDKSEWEEKAQKPK 266
           K+P  AY+LW     ++IK ++P     E++   G  W+++   +K  +EE+ ++ K
Sbjct: 158 KKPCPAYVLWCKDQWNEIKKESPDADFKEVSNALGAKWKALGAEEKQPYEERYRQEK 214



 Score = 37.5 bits (83), Expect = 0.012
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +3

Query: 84  KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM--YDKSEWEEKAQ 257
           K   KPK+PMSAY ++    R+ +  +     V EI +  GE W++M   +K+ +E  A+
Sbjct: 280 KDPSKPKQPMSAYFVYTQQRRAALVAEKK--NVPEIGRITGEEWKAMSEAEKAPFEAAAR 337

Query: 258 KPK 266
           K +
Sbjct: 338 KQR 340



 Score = 36.7 bits (81), Expect = 0.021
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +3

Query: 93  DKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM--YDKSEWEEKA 254
           ++PK+P S++LL+   AR ++ ++ PG+  + +       W+ +   +K  W  KA
Sbjct: 412 NRPKKPASSFLLFSKEARRQLAEERPGVASSTLTALVSVKWKELGEAEKQAWNGKA 467


>03_02_0522 +
           9103357-9103437,9103538-9103592,9103687-9103739,
           9103832-9104060,9104149-9104284,9104448-9104496,
           9105123-9105248,9106003-9106110,9106255-9106395
          Length = 325

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +1

Query: 445 RMISLNLYFSFKVL-LFIILNSDHEMNVFFSFWLLL 549
           R ++ NL F   VL LF++LNS H+M+  F  WL+L
Sbjct: 34  RPVNSNLAFLVTVLMLFMVLNS-HQMSPNFLVWLVL 68


>04_01_0239 - 3126367-3127230,3127342-3128247
          Length = 589

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +1

Query: 304 WRRSRREKKENPKTREESETGAKNKESETGRR 399
           W R+   K  N +    S    KNK  ETGRR
Sbjct: 156 WERAEAMKLANLENMRSSVKAEKNKRKETGRR 187


>01_02_0078 - 10894871-10895841,10897268-10898426
          Length = 709

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/28 (46%), Positives = 22/28 (78%), Gaps = 3/28 (10%)
 Frame = +1

Query: 298 CKWRRSRREKK-ENPKTR--EESETGAK 372
           C+WRR+RRE++  N K R  EE+++G++
Sbjct: 680 CRWRRNRREREGGNKKERGWEEADSGSQ 707


>12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561
          Length = 495

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 321 STGPPPFALNDSKSTMYCSLAFAPFLPIRFCHTWTSRFR 205
           +T P PF+L+ S ST  C+       P R    WT + R
Sbjct: 42  ATRPSPFSLSPSISTPGCARCGDVGCPYRLDQPWTQKVR 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,808,426
Number of Sequences: 37544
Number of extensions: 271925
Number of successful extensions: 745
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)