Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30641.Seq
(797 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 50 1e-06
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 49 3e-06
At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa... 48 5e-06
At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa... 48 5e-06
At3g28730.1 68416.m03587 structure-specific recognition protein ... 48 1e-05
At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGb... 47 1e-05
At1g20696.1 68414.m02593 high mobility group protein beta2 (HMGb... 44 1e-04
At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 41 8e-04
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 41 8e-04
At2g17560.1 68415.m02032 high mobility group protein gamma (HMGg... 40 0.003
At1g65090.1 68414.m07379 expressed protein 33 0.17
At4g35570.1 68417.m05054 high mobility group protein delta (HMGd... 33 0.22
At5g51820.1 68418.m06425 phosphoglucomutase, chloroplast (PGM) (... 30 1.5
At4g33390.1 68417.m04746 hypothetical protein contains Pfam prof... 30 2.0
At5g08240.1 68418.m00967 expressed protein 29 2.7
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 29 3.6
At4g13540.1 68417.m02111 expressed protein 28 8.3
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/59 (40%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Frame = +3
Query: 96 KPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYD--KSEWEEKAQKPK 266
KPK+P+SAYL++ N R+ +K +N V E+AK AGE W+++ + K+ +++ A+K K
Sbjct: 245 KPKQPISAYLIYANERRAALKGENKS--VIEVAKMAGEEWKNLSEEKKAPYDQMAKKNK 301
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 102 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWR--SMYDKSEWEEKAQKPK 266
KRP + Y+LW +++K NP E + G W+ S +K +EEK Q K
Sbjct: 130 KRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGISAEEKKPYEEKYQADK 186
Score = 34.7 bits (76), Expect = 0.072
Identities = 12/49 (24%), Positives = 27/49 (55%)
Frame = +3
Query: 93 DKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSE 239
+KPK+P S+Y L+ AR + +++PG+ + + W + ++ +
Sbjct: 370 NKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEEEK 418
>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
protein similar to HMG2B [Homo sapiens] GI:32335;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 456
Score = 49.2 bits (112), Expect = 3e-06
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Frame = +3
Query: 96 KPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSE--WEEKAQKPKN 269
KPK P+SA+L++ N R+ ++++N V E+AK GE W+++ DK + +E+ A+K K
Sbjct: 254 KPKHPVSAFLVYANERRAALREENK--SVVEVAKITGEEWKNLSDKKKAPYEKVAKKNKE 311
Query: 270 NTL 278
L
Sbjct: 312 TYL 314
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 102 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM--YDKSEWEEKAQKPK 266
KRP S+Y+LW +++K +NP E + G W+S+ DK +EE+ Q K
Sbjct: 139 KRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSLSAEDKKPYEERYQVEK 195
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +3
Query: 93 DKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWR--SMYDKSEWEEKAQK 260
+KPK+P S+Y L+ R K+ ++ PG + W+ S +K + KA K
Sbjct: 377 NKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEKQVYNGKAAK 434
>At3g51880.2 68416.m05690 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 185
Score = 48.4 bits (110), Expect = 5e-06
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Frame = +3
Query: 84 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM--YDKSEWEEKA 254
K +KPKR SA+ ++L R K +NP +K V+ + K G+ W+SM +K+ +EEKA
Sbjct: 48 KDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKA 107
Query: 255 QKPK 266
K K
Sbjct: 108 AKRK 111
>At3g51880.1 68416.m05689 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 178
Score = 48.4 bits (110), Expect = 5e-06
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Frame = +3
Query: 84 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM--YDKSEWEEKA 254
K +KPKR SA+ ++L R K +NP +K V+ + K G+ W+SM +K+ +EEKA
Sbjct: 48 KDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKA 107
Query: 255 QKPK 266
K K
Sbjct: 108 AKRK 111
>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
high mobility group protein / HMG protein nearly
identical to SP|Q05153 Structure-specific recognition
protein 1 homolog (HMG protein) {Arabidopsis thaliana};
contains Pfam profile PF00505: HMG (high mobility group)
box; contains Pfam profile PF03531: Structure-specific
recognition protein
Length = 646
Score = 47.6 bits (108), Expect = 1e-05
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 84 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMY--DKSEWEEKAQ 257
K + PKR MS ++ + R IK ++PG+ E+ K G+ WR M DK +E KAQ
Sbjct: 557 KDPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEAKAQ 616
Query: 258 KPK 266
K
Sbjct: 617 VDK 619
>At1g20693.1 68414.m02592 high mobility group protein beta1
(HMGbeta1) / HMG protein beta1 nearly identical to HMG
protein (HMGbeta1) [Arabidopsis thaliana] GI:2832359
Length = 144
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Frame = +3
Query: 84 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSMYD--KSEWEEKA 254
K +KPKRP SA+ +++ R K +NP K V + K AG+ W+S+ D K+ + KA
Sbjct: 33 KDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKA 92
Query: 255 QKPK 266
+K K
Sbjct: 93 EKRK 96
>At1g20696.1 68414.m02593 high mobility group protein beta2
(HMGbeta2) / HMG protein beta2 nearly identical to HMG
protein (HMGbeta2) [Arabidopsis thaliana] GI:2832361
Length = 141
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Frame = +3
Query: 84 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSMYD--KSEWEEKA 254
K +KPKRP SA+ +++ R K+++P K V + K GE W+S+ D K+ + KA
Sbjct: 30 KDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKA 89
Query: 255 QKPK 266
K K
Sbjct: 90 DKRK 93
>At5g23420.1 68418.m02747 high mobility group (HMG1/2) family
protein similar to high mobility group protein 2 HMG2
[Ipomoea nil] GI:1052956; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 241
Score = 41.1 bits (92), Expect = 8e-04
Identities = 15/50 (30%), Positives = 32/50 (64%)
Frame = +3
Query: 90 TDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSE 239
++KPKRP++A+ ++++ R K ++ G + AK GE W+S+ ++ +
Sbjct: 112 SNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKIGGEKWKSLTEEEK 161
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 41.1 bits (92), Expect = 8e-04
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +3
Query: 90 TDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM 224
T PK+P +A+ +L+ R + +++NP +K + EI K GE W++M
Sbjct: 60 TKMPKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTM 105
>At2g17560.1 68415.m02032 high mobility group protein gamma
(HMGgamma) / HMG protein gamma nearly identical to HMG
protein (HMGgamma) [Arabidopsis thaliana] GI:2832355
Length = 138
Score = 39.5 bits (88), Expect = 0.003
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = +3
Query: 84 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM--YDKSEWEEKA 254
K ++PKRP SA+ ++L R + NP K V + K AG W++M DK+ + KA
Sbjct: 30 KDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKA 89
Query: 255 QKPK 266
+ K
Sbjct: 90 ESRK 93
>At1g65090.1 68414.m07379 expressed protein
Length = 284
Score = 33.5 bits (73), Expect = 0.17
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +1
Query: 322 EKKENPKTREESETGAKNKESETGR 396
EK+E P+TR E ETGA E+ TG+
Sbjct: 178 EKREAPETRREGETGATKIETSTGK 202
>At4g35570.1 68417.m05054 high mobility group protein delta
(HMGdelta) / HMG protein delta identical to HMG protein
(HMGdelta) [Arabidopsis thaliana] GI:2832363
Length = 125
Score = 33.1 bits (72), Expect = 0.22
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Frame = +3
Query: 84 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM--YDKSEWEEKA 254
K ++PK+P S + ++L+ R + NP K V + + AG+ W++M +++ + K+
Sbjct: 29 KDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKS 88
Query: 255 QKPK 266
Q K
Sbjct: 89 QSKK 92
>At5g51820.1 68418.m06425 phosphoglucomutase, chloroplast (PGM)
(PGMP) / glucose phosphomutase identical to SP|Q9SCY0
Phosphoglucomutase, chloroplast precursor (EC 5.4.2.2)
(Glucose phosphomutase) (PGM) {Arabidopsis thaliana}
Length = 623
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = +3
Query: 117 AYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIW----RSMYDKSEWEEKAQKPKNNTL 278
A L WL+ + KD PG K+ +A E W R+ + + ++EE + N +
Sbjct: 451 AVLAWLSILAHRNKDTKPGDKLVSVADVVKEYWATYGRNFFSRYDYEECESEGANKMI 508
>At4g33390.1 68417.m04746 hypothetical protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827)
Length = 779
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 301 KWRRSRREKKENPKTREESETGAKNKESET 390
KWR +K++N + +S G+K KE+ET
Sbjct: 712 KWREVSEKKRKNGSSHGKSIQGSKEKEAET 741
>At5g08240.1 68418.m00967 expressed protein
Length = 258
Score = 29.5 bits (63), Expect = 2.7
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Frame = +1
Query: 211 SGGPCMTKANG--KKRRKSQRT----IHCRFRII*CKWRRSRREKKENPKTREESETGAK 372
S P +TK +G KK+ K +R + +FR+ + + S E+ E P +R E ET K
Sbjct: 30 SDKPMVTKGDGGEKKKMKKKRIPRWFLCSKFRLKNSEIKPSPIEETEKPTSRVEDETDDK 89
Query: 373 NKESETGRR 399
K RR
Sbjct: 90 QKPLSVIRR 98
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = +1
Query: 193 PKKQAKSGGPCMTKANGKKRRKSQRTIHCRFRII*CKWRRSRREKKENPKTREESETGAK 372
PKK A SG + ++ IH +F + + + RR+ + P +++E++
Sbjct: 272 PKKDALSGSDSQSLNQSTVSMARKKRIHAQFNDLQECYLQKRRQLADQPNSKQENDKSVV 331
Query: 373 NKE 381
+E
Sbjct: 332 RRE 334
>At4g13540.1 68417.m02111 expressed protein
Length = 210
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 232 KANGKKRRKSQRTIHCRFRII*CKWRRSRREKKENPKTREE-SETGAKNKESETGR 396
KAN ++RR+++R + + R+I +KE + REE K +E E G+
Sbjct: 20 KANEQRRRETRRELDEKERVILALKMAETEWRKERKRLREEVKRLRQKMEEKEEGK 75
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,650,567
Number of Sequences: 28952
Number of extensions: 247043
Number of successful extensions: 723
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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