Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30640.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac...    99   4e-22
SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S...    99   4e-22
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19...    38   6e-04
SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom...    27   1.6  

>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 153

 Score = 98.7 bits (235), Expect = 4e-22
 Identities = 42/48 (87%), Positives = 45/48 (93%)
 Frame = +2

Query: 257 MVGSIVGIYNGKTFNQVEIKPEMIGHYLGXFSVTYKPVKHGRPGIGAT 400
           MVGS+VGIYNGK FNQVEI+PEMIGHYLG FS+TYKP KHGRPGIGAT
Sbjct: 97  MVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGAT 144



 Score = 89.0 bits (211), Expect = 3e-19
 Identities = 44/82 (53%), Positives = 53/82 (64%)
 Frame = +3

Query: 9   LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVXKLRRAKK 188
           L+KKR FR F YRGV+L+QLLD+  EQL++L H         GL       + KLR+AK 
Sbjct: 14  LRKKRSFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKT 73

Query: 189 EAPPNEKPEIVKTHLXXMIIVP 254
           EAP NEKP  VKTHL  MII+P
Sbjct: 74  EAPLNEKPATVKTHLRNMIILP 95


>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score = 98.7 bits (235), Expect = 4e-22
 Identities = 42/48 (87%), Positives = 45/48 (93%)
 Frame = +2

Query: 257 MVGSIVGIYNGKTFNQVEIKPEMIGHYLGXFSVTYKPVKHGRPGIGAT 400
           MVGS+VGIYNGK FNQVEI+PEMIGHYLG FS+TYKP KHGRPGIGAT
Sbjct: 98  MVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGAT 145



 Score = 89.8 bits (213), Expect = 2e-19
 Identities = 44/82 (53%), Positives = 53/82 (64%)
 Frame = +3

Query: 9   LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVXKLRRAKK 188
           L+KKR FR F YRGV+L+QLLD+  EQL++L H         GL       + KLR+AK 
Sbjct: 15  LRKKRTFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKS 74

Query: 189 EAPPNEKPEIVKTHLXXMIIVP 254
           EAP NEKP  VKTHL  MII+P
Sbjct: 75  EAPLNEKPATVKTHLRNMIILP 96


>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
           S19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 38.3 bits (85), Expect = 6e-04
 Identities = 17/36 (47%), Positives = 25/36 (69%)
 Frame = +2

Query: 257 MVGSIVGIYNGKTFNQVEIKPEMIGHYLGXFSVTYK 364
           MVG+   ++NGK++  V+I  +MIGH LG F+ T K
Sbjct: 63  MVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 98


>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +1

Query: 10  SRKSVFSGSSLTGELISISSLICPMSNSWN 99
           S+ +  +   +TG +++ISS +C + N +N
Sbjct: 145 SQAAALASKDITGTIVAISSELCAVENQFN 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,683,672
Number of Sequences: 5004
Number of extensions: 27121
Number of successful extensions: 54
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)