Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30640.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0604 - 4491884-4491993,4493030-4493225,4494269-4494326,449...   102   2e-22
03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794...   100   1e-21
05_04_0331 + 20317482-20318174,20318518-20318685,20318773-203188...    28   3.6  
10_02_0185 - 6386761-6387122,6387589-6387826,6388215-6389696           27   8.4  

>07_01_0604 -
           4491884-4491993,4493030-4493225,4494269-4494326,
           4494459-4494613,4495092-4495115,4495377-4495489,
           4499943-4500129
          Length = 280

 Score =  102 bits (244), Expect = 2e-22
 Identities = 49/80 (61%), Positives = 58/80 (72%)
 Frame = +3

Query: 15  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVXKLRRAKKEA 194
           KKR FRK++YRGVDLD LLDM  + L++L           GLKRKPMAL+ KLR+AKK+A
Sbjct: 124 KKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDA 183

Query: 195 PPNEKPEIVKTHLXXMIIVP 254
           P  EKPE V+THL  MIIVP
Sbjct: 184 PAGEKPEPVRTHLRNMIIVP 203



 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 34/40 (85%), Positives = 38/40 (95%)
 Frame = +2

Query: 257 MVGSIVGIYNGKTFNQVEIKPEMIGHYLGXFSVTYKPVKH 376
           M+GSIVG+YNGKTFNQVEIKPEMIGHYL  FS++YKPVKH
Sbjct: 205 MIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKH 244


>03_06_0314 -
           33077621-33077869,33078218-33078280,33079392-33079449,
           33079534-33079688,33079797-33080106,33080634-33080890,
           33081280-33081359,33083888-33083948
          Length = 410

 Score = 99.5 bits (237), Expect = 1e-21
 Identities = 42/48 (87%), Positives = 46/48 (95%)
 Frame = +2

Query: 257 MVGSIVGIYNGKTFNQVEIKPEMIGHYLGXFSVTYKPVKHGRPGIGAT 400
           M+GSIVG+YNGKTFNQVEIKPEMIGHYL  FS++YKPVKHGRPGIGAT
Sbjct: 354 MIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGAT 401



 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 49/101 (48%), Positives = 58/101 (57%), Gaps = 21/101 (20%)
 Frame = +3

Query: 15  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVXKLRRA---- 182
           KKR FRK++YRGVDLD LLDM  + L++L           GLKRKPMAL+ KLR+A    
Sbjct: 252 KKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAGSNF 311

Query: 183 -----------------KKEAPPNEKPEIVKTHLXXMIIVP 254
                            KK+AP  EKPE V+THL  MIIVP
Sbjct: 312 EGTVFRLGFYEAGSYFVKKDAPAGEKPEPVRTHLRNMIIVP 352


>05_04_0331 +
           20317482-20318174,20318518-20318685,20318773-20318895,
           20319094-20319165,20321217-20321431,20321521-20321593,
           20322092-20322568,20322970-20323077,20323184-20323192,
           20323193-20323552
          Length = 765

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 49  ELISISSLICPM-SNSWN*CMXVRAGGSLVVLNVNQWHWS 165
           E+I I  L+C + S  WN  + + A  ++ +  VN+ HWS
Sbjct: 325 EVIEILHLVCHLWSLDWNEKIILSAYATIFIPIVNEGHWS 364


>10_02_0185 - 6386761-6387122,6387589-6387826,6388215-6389696
          Length = 693

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -3

Query: 200 RRSLFLGATQLXDQCHWFTFKTTSEPPARTXMH*FHELLI--GHIKELIEINSPVSELPE 27
           R+S  L AT L D  H F  K  +  PAR     FH  L+  GH     +   PVS +  
Sbjct: 264 RQSPALKAT-LQDAIHGFYLKALARLPARELRRRFHRSLLEAGHCYGPFD---PVSNIII 319

Query: 26  NTLFLE 9
           NT++ +
Sbjct: 320 NTIWYD 325


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,370,750
Number of Sequences: 37544
Number of extensions: 193975
Number of successful extensions: 326
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)