Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30640.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B) ribo...   100   5e-22
At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E)            99   2e-21
At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D) ribo...    99   2e-21
At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Stro...    99   2e-21
At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C) ribo...    98   3e-21
At5g63070.1 68418.m07914 40S ribosomal protein S15, putative           83   1e-16
At1g33850.1 68414.m04194 40S ribosomal protein S15, putative sim...    64   7e-11
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria...    37   0.007
At1g75890.1 68414.m08815 family II extracellular lipase 2 (EXL2)...    28   3.0  

>At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 152

 Score =  100 bits (240), Expect = 5e-22
 Identities = 46/82 (56%), Positives = 59/82 (71%)
 Frame = +3

Query: 9   LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVXKLRRAKK 188
           L KKR F+KF+++GVDLD LLDMP + L+EL           GL RKPMAL+ KLR+AK 
Sbjct: 13  LAKKRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKL 72

Query: 189 EAPPNEKPEIVKTHLXXMIIVP 254
           +AP  EKPE+V+THL  M+I+P
Sbjct: 73  DAPAGEKPEVVRTHLRNMVIMP 94



 Score = 95.1 bits (226), Expect = 2e-20
 Identities = 38/48 (79%), Positives = 45/48 (93%)
 Frame = +2

Query: 257 MVGSIVGIYNGKTFNQVEIKPEMIGHYLGXFSVTYKPVKHGRPGIGAT 400
           M+GSI+G+YNGKTFNQ+EIKPEMIGHYL  FS+TYKPV+HG+PG GAT
Sbjct: 96  MIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKPVRHGKPGHGAT 143


>At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E) 
          Length = 149

 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 40/48 (83%), Positives = 46/48 (95%)
 Frame = +2

Query: 257 MVGSIVGIYNGKTFNQVEIKPEMIGHYLGXFSVTYKPVKHGRPGIGAT 400
           M+GSI+G+YNGKTFNQVEIKPEMIGHYL  FS++YKPVKHGRPG+GAT
Sbjct: 93  MIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGAT 140



 Score = 92.3 bits (219), Expect = 2e-19
 Identities = 46/80 (57%), Positives = 54/80 (67%)
 Frame = +3

Query: 15  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVXKLRRAKKEA 194
           KKR F+KF++RGVDLD LLDM  E L++            GL RKPMAL+ KLR+AK EA
Sbjct: 12  KKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKMEA 71

Query: 195 PPNEKPEIVKTHLXXMIIVP 254
           P  EKP  V+THL  MIIVP
Sbjct: 72  PAGEKPASVRTHLRNMIIVP 91


>At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 152

 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 40/48 (83%), Positives = 46/48 (95%)
 Frame = +2

Query: 257 MVGSIVGIYNGKTFNQVEIKPEMIGHYLGXFSVTYKPVKHGRPGIGAT 400
           M+GSI+G+YNGKTFNQVEIKPEMIGHYL  FS++YKPVKHGRPG+GAT
Sbjct: 96  MIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGAT 143



 Score = 96.7 bits (230), Expect = 8e-21
 Identities = 46/80 (57%), Positives = 56/80 (70%)
 Frame = +3

Query: 15  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVXKLRRAKKEA 194
           KKR F+KF ++GVDLD LLDM  + L++L           GL RKPMAL+ KLR+AK+EA
Sbjct: 15  KKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREA 74

Query: 195 PPNEKPEIVKTHLXXMIIVP 254
           P  EKPE V+THL  MIIVP
Sbjct: 75  PAGEKPEPVRTHLRNMIIVP 94


>At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Strong
           similarity to Oryza 40S ribosomal protein S15. ESTs
           gb|R29788,gb|ATTS0365 come from this gene
          Length = 152

 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 40/48 (83%), Positives = 46/48 (95%)
 Frame = +2

Query: 257 MVGSIVGIYNGKTFNQVEIKPEMIGHYLGXFSVTYKPVKHGRPGIGAT 400
           M+GSI+G+YNGKTFNQVEIKPEMIGHYL  FS++YKPVKHGRPG+GAT
Sbjct: 96  MIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGAT 143



 Score = 96.7 bits (230), Expect = 8e-21
 Identities = 46/80 (57%), Positives = 56/80 (70%)
 Frame = +3

Query: 15  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVXKLRRAKKEA 194
           KKR F+KF ++GVDLD LLDM  + L++L           GL RKPMAL+ KLR+AK+EA
Sbjct: 15  KKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREA 74

Query: 195 PPNEKPEIVKTHLXXMIIVP 254
           P  EKPE V+THL  MIIVP
Sbjct: 75  PQGEKPEPVRTHLRNMIIVP 94


>At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 150

 Score = 98.3 bits (234), Expect = 3e-21
 Identities = 39/48 (81%), Positives = 46/48 (95%)
 Frame = +2

Query: 257 MVGSIVGIYNGKTFNQVEIKPEMIGHYLGXFSVTYKPVKHGRPGIGAT 400
           M+GS++G+YNGKTFNQVEIKPEMIGHYL  FS++YKPVKHGRPG+GAT
Sbjct: 94  MIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGAT 141



 Score = 94.3 bits (224), Expect = 4e-20
 Identities = 46/80 (57%), Positives = 55/80 (68%)
 Frame = +3

Query: 15  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVXKLRRAKKEA 194
           KKR F+KF++RGVDLD LLDM  + L++L           GL RKPMAL+ KLR+AK EA
Sbjct: 13  KKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEA 72

Query: 195 PPNEKPEIVKTHLXXMIIVP 254
           P  EKP  V+THL  MIIVP
Sbjct: 73  PAGEKPAAVRTHLRNMIIVP 92


>At5g63070.1 68418.m07914 40S ribosomal protein S15, putative
          Length = 160

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 42/82 (51%), Positives = 54/82 (65%), Gaps = 2/82 (2%)
 Frame = +3

Query: 15  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVXKLRRAKKEA 194
           KKR F+KF++RG ++D LL M N  L +L +         GLK++P+ L+ KLRRAKKEA
Sbjct: 17  KKRTFKKFSFRGFNVDALLKMSNVDLAKLFNARVRRRFYRGLKKQPLILIKKLRRAKKEA 76

Query: 195 PPNE--KPEIVKTHLXXMIIVP 254
                 KPE+VKTHL  MIIVP
Sbjct: 77  SDENKMKPEVVKTHLRNMIIVP 98



 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 29/45 (64%), Positives = 36/45 (80%)
 Frame = +2

Query: 257 MVGSIVGIYNGKTFNQVEIKPEMIGHYLGXFSVTYKPVKHGRPGI 391
           M+GS+VG++NGK FN++ IKPEMIGHYL  FS+T K V H RP I
Sbjct: 100 MIGSVVGVHNGKKFNEIVIKPEMIGHYLAEFSMTCKKVNHHRPRI 144


>At1g33850.1 68414.m04194 40S ribosomal protein S15, putative
           similar to SP|Q08112 40S ribosomal protein S15
           {Arabidopsis thaliana}
          Length = 70

 Score = 63.7 bits (148), Expect = 7e-11
 Identities = 31/58 (53%), Positives = 38/58 (65%)
 Frame = +3

Query: 15  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVXKLRRAKK 188
           KKRIF+KF++RGVDLD LLDM  E L++            G  RKPMAL+ KLR+A K
Sbjct: 12  KKRIFKKFSFRGVDLDALLDMSTEDLVKHFSSRIRRRFSRGFTRKPMALIKKLRKAVK 69


>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
           (RPS19)
          Length = 212

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +2

Query: 260 VGSIVGIYNGKTFNQVEIKPEMIGHYLGXFSVTYKPVKHGR 382
           V S V IYNGKT  + +I    +GH  G F+ T K  KH +
Sbjct: 170 VDSAVRIYNGKTHVRCKITEGKVGHKFGEFAFTRKVKKHAK 210


>At1g75890.1 68414.m08815 family II extracellular lipase 2 (EXL2)
           EXL2 (PMID:11431566); similar to anter-specific
           proline-rich protein (APG) SP:P40602 [Arabidopsis
           thaliana]
          Length = 379

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 338 LGXFSVTYKPVKHGRPGIGATTQLKVHSAQVERLKQPLG 454
           L  +   YKP+   + GI  + QLK+    VE++K+ +G
Sbjct: 142 LSTYLFIYKPLLFLKGGIALSQQLKLFEEYVEKMKKMVG 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,982,736
Number of Sequences: 28952
Number of extensions: 149367
Number of successful extensions: 329
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)