Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30638.Seq
         (528 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6ACM1 Cluster: ABC-type transporter, permease protein;...    33   3.1  
UniRef50_UPI0000498AE3 Cluster: Rab GTPase activating protein; n...    32   7.1  
UniRef50_A7TNC4 Cluster: Putative uncharacterized protein; n=1; ...    32   9.4  

>UniRef50_Q6ACM1 Cluster: ABC-type transporter, permease protein;
           n=1; Leifsonia xyli subsp. xyli|Rep: ABC-type
           transporter, permease protein - Leifsonia xyli subsp.
           xyli
          Length = 202

 Score = 33.5 bits (73), Expect = 3.1
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -2

Query: 455 GVIVVECFDRTGRGRGRRHPARTPRLSTGTG 363
           G  V +  DRTG GRG + P   PR   GTG
Sbjct: 161 GRAVAKALDRTGAGRGLQGPVARPRRERGTG 191


>UniRef50_UPI0000498AE3 Cluster: Rab GTPase activating protein; n=1;
           Entamoeba histolytica HM-1:IMSS|Rep: Rab GTPase
           activating protein - Entamoeba histolytica HM-1:IMSS
          Length = 604

 Score = 32.3 bits (70), Expect = 7.1
 Identities = 11/39 (28%), Positives = 26/39 (66%)
 Frame = -3

Query: 193 PLNFINLVLLQLNIMVGKLLTHSFTSYLMKVLISSINYY 77
           P+ F+N  +  LNI++ K +T++F SY   + +++++ +
Sbjct: 136 PIQFVNKEVGLLNILINKTMTNNFDSYKYSICLTNLSSF 174


>UniRef50_A7TNC4 Cluster: Putative uncharacterized protein; n=1;
           Vanderwaltozyma polyspora DSM 70294|Rep: Putative
           uncharacterized protein - Vanderwaltozyma polyspora DSM
           70294
          Length = 471

 Score = 31.9 bits (69), Expect = 9.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 405 AATSSTGSIETFHHYNSSKTKETTLIFRKPTKRTYPS 515
           ++T ST S   FH  N  K KE   +F+ PT   Y S
Sbjct: 252 SSTGSTSSDTKFHFANLKKLKEKINVFKNPTNSYYKS 288


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 464,589,901
Number of Sequences: 1657284
Number of extensions: 8650907
Number of successful extensions: 25326
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25295
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33455602480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)