Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30638.Seq
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.32 
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   5.3  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    25   5.3  
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    25   7.0  
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    25   9.2  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    25   9.2  

>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +3

Query: 180 IKLRGVSRFRVERNTISTSCQSTLNGARQRKDYIFILYDYLY 305
           + L GV  F+V  N IST    TL         I+   DYLY
Sbjct: 642 LTLEGVPDFKVYSNPISTDLPLTLQSPSDEFSTIYAWSDYLY 683


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 512 WVRSFRWLSKYQCGFLCLRGVI 447
           W+ +F W+  +  GF C R V+
Sbjct: 226 WLMAFIWVGLFLFGFACFREVL 247


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 298 TSITLVAAPTPSNKYYNSTSTKPVPVES 381
           TS+  ++ P  SNK+ N   T P+ V S
Sbjct: 389 TSVLSLSVPNASNKHENGDLTSPLGVPS 416


>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 202 LLTPLNFINLVLLQLNIMVGKLLTHSFTSYLMKV 101
           LLTP N  N  LL      G + T +F  +L K+
Sbjct: 302 LLTPFNVDNRQLLMFQAAGGYIPTENFDQFLNKL 335


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 444 HYNSSKTKETTLIFRKPTKRTYPSV 518
           +YNS++     L+  KPTK  YP V
Sbjct: 82  YYNSTRLLVHRLVKFKPTKSKYPVV 106


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 429 IETFHHYNSSKTKETTLIFRKPTKRTYPSV 518
           ++  HH N+ K K       K TK T P+V
Sbjct: 115 VDQIHHSNNEKAKIRFSKIEKYTKETRPTV 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,962,092
Number of Sequences: 5004
Number of extensions: 36732
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)