Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30638.Seq
         (528 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1087 - 34430521-34430899,34432336-34432806,34432926-344331...    29   2.3  
10_07_0110 + 12977702-12977958,12978374-12978527,12978661-129787...    28   5.3  
05_01_0096 + 654074-654499,654673-655326                               28   5.3  
01_05_0636 + 23852985-23853142,23853253-23853445,23853910-238540...    28   5.3  
12_01_0686 - 5855216-5858263                                           27   7.1  

>01_06_1087 -
           34430521-34430899,34432336-34432806,34432926-34433112,
           34433470-34433599,34433794-34434125,34434566-34435050,
           34435185-34435752,34436579-34436640,34437569-34437636
          Length = 893

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 366 GAGREPRCPRGMTAATSSTG 425
           G GR+ RCP G+ AA S +G
Sbjct: 824 GGGRKERCPTGLPAACSGSG 843


>10_07_0110 +
           12977702-12977958,12978374-12978527,12978661-12978798,
           12978903-12979133,12979228-12979371,12979516-12979606,
           12979798-12979868,12980014-12980128,12980313-12980431,
           12980539-12980604,12980701-12980829,12980919-12981062,
           12981522-12981704
          Length = 613

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 403 VIPRGHRGSRPAPVLLTLSYS 341
           +IP GHR  +PAP+   L+YS
Sbjct: 536 LIPSGHRIGKPAPLFKGLNYS 556


>05_01_0096 + 654074-654499,654673-655326
          Length = 359

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 30/100 (30%), Positives = 43/100 (43%)
 Frame = +3

Query: 177 LIKLRGVSRFRVERNTISTSCQSTLNGARQRKDYIFILYDYLYHARGGSHAFK*IL*LNV 356
           LI+ R +S  R   + +  SC STL+    R   + + Y Y+    G   A   +     
Sbjct: 189 LIEFRSLSMPRGVEDVVVGSC-STLDS---RLSTVELSYAYI---GGAVEAAVDVTLRLP 241

Query: 357 NKTGAGREPRCPRGMTAATSSTGSIETFHHYNSSKTKETT 476
              GAGR  RC  G   A SS+    +   Y+SSK   T+
Sbjct: 242 AAAGAGRHRRCFHGQITACSSSIPDASIVLYDSSKVNATS 281


>01_05_0636 +
           23852985-23853142,23853253-23853445,23853910-23854033,
           23854285-23854637,23855525-23856530,23856892-23857085,
           23857238-23857324
          Length = 704

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
 Frame = +3

Query: 219 NTISTSCQSTLNGA-RQRKDYI---FILYDYLYHARGGSHAFK*IL*LNVNKTGAGREPR 386
           NTIST   +T NGA  QR++ +     L     H +GGSH+        V  TG      
Sbjct: 487 NTISTDAGTTTNGADHQRENSVNGTSNLVANPEHQQGGSHSDT----SRVTSTGEVSNEE 542

Query: 387 CPRGMTAATSSTGSIETFHHYNSSKT 464
              G  A  S T + E   H +  K+
Sbjct: 543 SETGHAAIKSHTSTDELGQHGSDPKS 568


>12_01_0686 - 5855216-5858263
          Length = 1015

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 199  LTPLNFINLVLLQLNIMVGKL-LTHSFTSYLMKVLISSINYYTPTLQNVC 53
            L  LNF++ + L  N++VG++  ++ F+++     + +I    P L   C
Sbjct: 917  LASLNFLSTLNLSYNMLVGRIPNSYQFSTFSNNSFLGNIGLCGPPLSKQC 966


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,295,939
Number of Sequences: 37544
Number of extensions: 240511
Number of successful extensions: 622
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)