Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30638.Seq
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58762-3|AAM15611.1|  331|Caenorhabditis elegans Hypothetical pr...    31   0.67 
U58762-2|AAK39302.1|  722|Caenorhabditis elegans Hypothetical pr...    31   0.67 
U58762-1|AAK39301.1|  732|Caenorhabditis elegans Hypothetical pr...    31   0.67 
U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z82089-1|CAB05002.1|  983|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81511-2|CAB04167.1|  983|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z47358-9|CAA87434.3|  436|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AL032651-2|CAB60579.1|  272|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z83115-7|CAJ85758.1|  318|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z83115-6|CAB05558.1|  384|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z81137-12|CAJ85772.1|  318|Caenorhabditis elegans Hypothetical p...    27   6.3  
Z81137-11|CAB03472.1|  384|Caenorhabditis elegans Hypothetical p...    27   6.3  

>U58762-3|AAM15611.1|  331|Caenorhabditis elegans Hypothetical
           protein T27F7.2c protein.
          Length = 331

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +1

Query: 289 STTTSITLVAAPTPSNKYYNSTSTKPVP 372
           STTTS + VA+ + SN   +ST T PVP
Sbjct: 110 STTTSTSSVASSSSSNGSSSSTDTSPVP 137


>U58762-2|AAK39302.1|  722|Caenorhabditis elegans Hypothetical
           protein T27F7.2b protein.
          Length = 722

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +1

Query: 289 STTTSITLVAAPTPSNKYYNSTSTKPVP 372
           STTTS + VA+ + SN   +ST T PVP
Sbjct: 479 STTTSTSSVASSSSSNGSSSSTDTSPVP 506


>U58762-1|AAK39301.1|  732|Caenorhabditis elegans Hypothetical
           protein T27F7.2a protein.
          Length = 732

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +1

Query: 289 STTTSITLVAAPTPSNKYYNSTSTKPVP 372
           STTTS + VA+ + SN   +ST T PVP
Sbjct: 489 STTTSTSSVASSSSSNGSSSSTDTSPVP 516


>U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical
           protein T09D3.3 protein.
          Length = 592

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +1

Query: 289 STTTSITLVAAPTPSNKYYNSTSTKPVPVES 381
           STTTS T +  PT S+    +T+T PVPV S
Sbjct: 450 STTTSATTLV-PTTSSSTTTTTTTTPVPVTS 479


>Z82089-1|CAB05002.1|  983|Caenorhabditis elegans Hypothetical
           protein ZK270.1 protein.
          Length = 983

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 481 ISVVSFVLEEL*WWNVSIEPVEDVAAVIPRGHRGSRPAPV 362
           +S+ + +L  L WW V ++P+   A +I  G     PA V
Sbjct: 815 LSICAGILGFLSWWKVDLDPITMAAMIISIGFSVDIPAHV 854


>Z81511-2|CAB04167.1|  983|Caenorhabditis elegans Hypothetical
           protein ZK270.1 protein.
          Length = 983

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 481 ISVVSFVLEEL*WWNVSIEPVEDVAAVIPRGHRGSRPAPV 362
           +S+ + +L  L WW V ++P+   A +I  G     PA V
Sbjct: 815 LSICAGILGFLSWWKVDLDPITMAAMIISIGFSVDIPAHV 854


>Z47358-9|CAA87434.3|  436|Caenorhabditis elegans Hypothetical
           protein ZK1307.7 protein.
          Length = 436

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = -3

Query: 268 LCRAPFNVD*QLVDIVFLSTRNLLTPLNFINL--VLLQLNIMVGKLLTHSFTSYLMKVLI 95
           LCR P +    LV ++FLS  ++     +I L  V L ++    +LL  ++ SY M+++I
Sbjct: 67  LCRNPRHRHSHLVYLMFLSVADIFLSAAYILLFPVNLYMDYFASELLAAAWWSY-MRIMI 125

Query: 94  SSINYYTPT 68
           +  + +  T
Sbjct: 126 TISHVFIST 134


>AL032651-2|CAB60579.1|  272|Caenorhabditis elegans Hypothetical
           protein Y6D1A.2 protein.
          Length = 272

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 290 EYKNIIFSLPRSVQC*LTTCRYCVSLYSKPTD 195
           EY++    +PR + C  T C  C++   KPT+
Sbjct: 189 EYEDTKERVPRVLDCGHTICHECITRIHKPTE 220


>Z83115-7|CAJ85758.1|  318|Caenorhabditis elegans Hypothetical
           protein K11D2.4b protein.
          Length = 318

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 226 YLQVVNQH*TERGKEKIIFLYSTTTSITLVAAPTPSNKYYNST 354
           +L  + +H ++ G E+ +   ST +S+T   AP P+ K   ST
Sbjct: 35  HLAAIGRHSSQGGSERHL---STESSVTQAPAPVPTTKRSRST 74


>Z83115-6|CAB05558.1|  384|Caenorhabditis elegans Hypothetical
           protein K11D2.4a protein.
          Length = 384

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 226 YLQVVNQH*TERGKEKIIFLYSTTTSITLVAAPTPSNKYYNST 354
           +L  + +H ++ G E+ +   ST +S+T   AP P+ K   ST
Sbjct: 101 HLAAIGRHSSQGGSERHL---STESSVTQAPAPVPTTKRSRST 140


>Z81137-12|CAJ85772.1|  318|Caenorhabditis elegans Hypothetical
           protein K11D2.4b protein.
          Length = 318

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 226 YLQVVNQH*TERGKEKIIFLYSTTTSITLVAAPTPSNKYYNST 354
           +L  + +H ++ G E+ +   ST +S+T   AP P+ K   ST
Sbjct: 35  HLAAIGRHSSQGGSERHL---STESSVTQAPAPVPTTKRSRST 74


>Z81137-11|CAB03472.1|  384|Caenorhabditis elegans Hypothetical
           protein K11D2.4a protein.
          Length = 384

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 226 YLQVVNQH*TERGKEKIIFLYSTTTSITLVAAPTPSNKYYNST 354
           +L  + +H ++ G E+ +   ST +S+T   AP P+ K   ST
Sbjct: 101 HLAAIGRHSSQGGSERHL---STESSVTQAPAPVPTTKRSRST 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,789,977
Number of Sequences: 27780
Number of extensions: 209213
Number of successful extensions: 642
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)