Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30634.Seq
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663...    30   1.5  
08_02_0095 - 12285976-12286037,12286111-12287229,12287494-122886...    29   3.5  
03_01_0372 + 2895807-2895883,2896557-2896647,2896741-2896839,289...    29   3.5  
04_04_1475 + 33856351-33856582,33857614-33857781,33858156-338582...    29   4.7  
12_02_0437 - 19084990-19087695                                         28   8.2  

>03_05_1096 -
           30364144-30365310,30365825-30365971,30366087-30366393,
           30366541-30366849,30367544-30370567,30370640-30372290,
           30372373-30373463,30373544-30373646,30373737-30374439,
           30374654-30375783,30375913-30376027,30376504-30376695,
           30377443-30377616,30378438-30378494,30378581-30378716,
           30378842-30378927,30379023-30379092,30379993-30380021,
           30380444-30380456,30380762-30381006
          Length = 3582

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 290 IHLPRGKKGXKSYKNNFKLVWHPMRSSFAER 382
           IH+P G KG    + +F+  W   RSS +E+
Sbjct: 89  IHVPIGNKGKNELELDFRRFWEEFRSSSSEK 119


>08_02_0095 -
           12285976-12286037,12286111-12287229,12287494-12288604,
           12288695-12288757,12288851-12288913,12289268-12289318,
           12289538-12289617,12290078-12290164,12290349-12290435,
           12290889-12290975,12292106-12292308,12292756-12292922
          Length = 1059

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 600 TCSHNNSWTDKEGVYTLGNMHMVSGGKES 686
           T  H + WT  E +Y L N H  S GK S
Sbjct: 251 TAYHISEWTTIEDLYELKNTHFKSQGKSS 279


>03_01_0372 +
           2895807-2895883,2896557-2896647,2896741-2896839,
           2897220-2897268,2897269-2897405,2898027-2898248,
           2898335-2898488,2898574-2898723,2898890-2898978,
           2899632-2899844,2900180-2900314,2900461-2900640,
           2901004-2901111,2901215-2901340,2901421-2901550,
           2901637-2901729,2902067-2902192,2902294-2902304
          Length = 729

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +2

Query: 212 NIPVSNKQKYRQTSHVWGFAETGALGIHLPRGKKGXKSYKNNFKLVWHPMRSSFAERFDI 391
           ++P + K + R   HV+   + G +  H    K   +S +++  L+ H  RSS  E    
Sbjct: 180 SLPGAAKVEIRDLEHVFQLLQIGEMNRHAANTKMNTESSRSHAILIIHIQRSSRIEDGSN 239

Query: 392 TNIACG 409
           T++  G
Sbjct: 240 TSLPNG 245


>04_04_1475 +
           33856351-33856582,33857614-33857781,33858156-33858261,
           33858391-33858442,33858525-33858642,33858736-33858766,
           33858962-33858985,33859075-33859199,33860087-33860168,
           33860319-33860441,33860539-33860592,33860669-33860738,
           33861276-33861309,33861824-33862170
          Length = 521

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +2

Query: 260 WGFAETGALGIHLPRGKKGXKSYKNNFKLVWHPMRSSFAERFDITNIACGYGFTVASIKT 439
           WG A+ G LG     G  G KS  N       P +    E   + ++ CGYG +   +  
Sbjct: 338 WGTAQNGELGY----GPNGQKSSAN-------PKKVDILEGMHVISVGCGYGLSAIVVDR 386

Query: 440 S 442
           S
Sbjct: 387 S 387


>12_02_0437 - 19084990-19087695
          Length = 901

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 67  LIVVCLEI*LICMQLNF*YTGEVLFSC*IEFP 162
           LI +C    L+C++LN  Y GE L  C   FP
Sbjct: 789 LISLCKMANLVCLELNCAYDGEALRFCAEWFP 820


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,822,376
Number of Sequences: 37544
Number of extensions: 386232
Number of successful extensions: 824
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)