Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30634.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14941| Best HMM Match : SH3_1 (HMM E-Value=1.1e-12)                 29   3.6  
SB_7939| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_17995| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     28   6.3  
SB_28088| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_14941| Best HMM Match : SH3_1 (HMM E-Value=1.1e-12)
          Length = 469

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +1

Query: 472 QYRFPNWIPFTTRNHPLELLL---SYAPIYIPYKSLECEIXAVAAGR 603
           + +F NWIP+     PLELL    SY P+  P    E E   + A R
Sbjct: 407 EIQFENWIPYFCFVLPLELLQHYPSYRPVLTPATKPEEEPQQITAYR 453


>SB_7939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
 Frame = +2

Query: 290 IHLPRGKKGXKSYKNNFKLV-WHPMRSSFAER--FDITNIACGYGFTVASIKTSEQHKVF 460
           + LP   K    Y+ +F+L    P + +      +D T        T+A ++T E H  F
Sbjct: 128 VRLPLPLKNDARYRGHFELCECSPHQGNIIASCSYDFTIKTWDTTSTLAPLETIEHHSEF 187

Query: 461 GTGINTDSQIGYHSPREIILWNF 529
            TG++       H P ++ ++N+
Sbjct: 188 ATGLD----FNIHQPGQVSVFNY 206


>SB_17995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 653

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 407 GYGFTVASIKTSEQHKVFGT-GINTDSQIGYHSPREIILWNFCLAMHLFI 553
           GYG  +        + V G  G+N +  +  H   E++L + CLA  +F+
Sbjct: 548 GYGLGIVQSARQFANLVAGLQGVNLEGMLLNHCKEELLLGDNCLARSIFV 597


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 678 YRH*PYACYLMYRHLLCRSRNYC 610
           YRH  Y CY  +R+   R  +YC
Sbjct: 17  YRHHHYCCYCHHRYCYYRHHHYC 39


>SB_28088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 906

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 310 LATWEVDTQSTCLSKSPHMTRLS 242
           + TW VD  S C S SPH   L+
Sbjct: 88  IRTWNVDVNSLCCSWSPHAVWLA 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,068,632
Number of Sequences: 59808
Number of extensions: 467236
Number of successful extensions: 1181
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)