Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30634.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    31   0.79 
Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U37430-2|AAL08045.2|  802|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1 prepropro...    28   5.6  
AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical...    28   5.6  
Z82080-8|CAD92382.3|  404|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U00047-12|AAA50685.1|  332|Caenorhabditis elegans Nuclear hormon...    28   7.4  
AL032625-7|CAN86642.1|  404|Caenorhabditis elegans Hypothetical ...    28   7.4  
AL023854-1|CAH60790.2|  404|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z81497-6|CAB04082.2|  604|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z75953-5|CAB00102.2|  604|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z68299-5|CAI46584.1|  111|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
            F40H6.5 protein.
          Length = 1288

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
 Frame = +2

Query: 206  FTNIPVSNKQKYRQTSHVWGFAETGALGIHLP-RGKKGXKSYKNNFKLVWHPMRSSFAER 382
            + N   SN   Y   + ++G   T A+ +H+  R     +   NNF   W P      E 
Sbjct: 1035 WNNATESNVNFYLGFNPLFG---TTAVPVHISQRWSSSARIIYNNFWGQWGP------EA 1085

Query: 383  FDITNIACGYGFTVASIKTSEQHKVFGTG 469
            F       G  F ++ IKT+  H+++G G
Sbjct: 1086 FSARPFTRGQPFVISLIKTANSHQIYGNG 1114


>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical
           protein C38D4.3 protein.
          Length = 1784

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = -3

Query: 600 SRCHCXNLTLQALVRYINRCIAKQKFQRMISRGEWYPIWESVLIPVPKTL--CCSEVFIE 427
           +R +  +L +Q++VR +NR     +F   I   EWYP       P P  L  C   V I 
Sbjct: 699 ARKNSSSLPVQSVVRKMNRQAPNAQFWNDIPHDEWYP-------PTPLDLLECLLNVSIS 751

Query: 426 ATVKP*PQAMFVISNLSAKED 364
            ++K      +VI  +S   +
Sbjct: 752 ESIKRELVVQYVIDWISTSPE 772


>U37430-2|AAL08045.2|  802|Caenorhabditis elegans Hypothetical
           protein K09F5.6 protein.
          Length = 802

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 391 NKHSLWLRFHSSLNKNFRAAQSFRYRYQYRFPNWIPFTTRNHPLELLLSYAPIYI 555
           N  S+W    ++L +++     F    +YR  N I + T  +P   L++YA IY+
Sbjct: 11  NLSSIWYTILTTLLQSYLLYLGFE---RYRLYNEIKWPTGGYPYGYLMAYATIYL 62


>U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1
           preproprotein protein.
          Length = 1042

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 660 ACYLMYRHLLCRSRNYCVSTSRCHCXN 580
           AC      LLC    +C +T+RC C N
Sbjct: 665 ACPTNNLALLCSGHGHCTTTARCVCFN 691


>AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical
           protein Y37D8A.13 protein.
          Length = 1042

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 660 ACYLMYRHLLCRSRNYCVSTSRCHCXN 580
           AC      LLC    +C +T+RC C N
Sbjct: 665 ACPTNNLALLCSGHGHCTTTARCVCFN 691


>Z82080-8|CAD92382.3|  404|Caenorhabditis elegans Hypothetical
           protein W09G3.7a protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 356 PMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIG 493
           P R ++     I  I+ G+GF++ + K    ++++G GIN   QIG
Sbjct: 57  PKRIAYFNTKSIKFISSGFGFSLFASK----NRLYGAGINNRFQIG 98


>U00047-12|AAA50685.1|  332|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 9 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 660 ACYLMYRHL-LCRSRNYCVSTSRCHCXNLTLQALVRYINRCI 538
           AC + +R   L +S  +C++   C   NL L       N+C+
Sbjct: 33  ACKMFFRRATLGKSEKFCINNDNCDTSNLILTCRQCRYNKCL 74


>AL032625-7|CAN86642.1|  404|Caenorhabditis elegans Hypothetical
           protein W09G3.7a protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 356 PMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIG 493
           P R ++     I  I+ G+GF++ + K    ++++G GIN   QIG
Sbjct: 57  PKRIAYFNTKSIKFISSGFGFSLFASK----NRLYGAGINNRFQIG 98


>AL023854-1|CAH60790.2|  404|Caenorhabditis elegans Hypothetical
           protein W09G3.7a protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 356 PMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIG 493
           P R ++     I  I+ G+GF++ + K    ++++G GIN   QIG
Sbjct: 57  PKRIAYFNTKSIKFISSGFGFSLFASK----NRLYGAGINNRFQIG 98


>Z81497-6|CAB04082.2|  604|Caenorhabditis elegans Hypothetical
           protein F10C2.3 protein.
          Length = 604

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 666 PYACYLMYRHLLCRSRNYCVSTSRCHCXNLTLQALVRYINRCIAKQKF 523
           PY   + + ++  RSRN C    R H  NL L  L +++++   + KF
Sbjct: 297 PYWLNVYWTYVHRRSRNLCYGNHRMH--NLQLNYLSQFVSKYKDQPKF 342


>Z75953-5|CAB00102.2|  604|Caenorhabditis elegans Hypothetical
           protein F10C2.3 protein.
          Length = 604

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 666 PYACYLMYRHLLCRSRNYCVSTSRCHCXNLTLQALVRYINRCIAKQKF 523
           PY   + + ++  RSRN C    R H  NL L  L +++++   + KF
Sbjct: 297 PYWLNVYWTYVHRRSRNLCYGNHRMH--NLQLNYLSQFVSKYKDQPKF 342


>Z68299-5|CAI46584.1|  111|Caenorhabditis elegans Hypothetical
          protein T04B2.8 protein.
          Length = 111

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 24 FALNTLDYYRYNLFFDCGMLGNLI 95
          F L  L+ + +NL F CG LG L+
Sbjct: 6  FGLEALNTFYFNLVFLCGFLGYLV 29


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,553,156
Number of Sequences: 27780
Number of extensions: 354721
Number of successful extensions: 978
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)